PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C007680P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 277aa    MW: 31701.2 Da    PI: 6.6709
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C007680P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.21.1e-1195141455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h ++ErrRR++i++ f  L  l+P +      K +Ka++L  A+eY+k+Lq
  MELO3C007680P1  95 EHVIAERRRREKIRQNFIALSALIPGL-----IKRDKASVLGGAIEYVKELQ 141
                     6999**********************9.....69*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.34291140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-1594154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-1694158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-995141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.74E-1196145No hitNo description
SMARTSM003536.1E-1297146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MMECSYEYER MKKCPHDYTL DELNFPAKEK VNNLRSSSQL VSFGDYSGEI ENYKFDNYGN  60
LIGSGEKGHE IKKDYCSTII MGQLPNRNRN HNNSEHVIAE RRRREKIRQN FIALSALIPG  120
LIKRDKASVL GGAIEYVKEL QERLKWAEEE AEKQKSVIKS VVFVKRINLD SDDSENETFS  180
LDENGDRSSV RSVPTIEIRV LEKDVMVRIH CKKRQGCYTS ILSQIEKLKL TILNSCVSPF  240
GESRLDITIV AEMEAGFCMT PMDVGKNLRE TLVEFI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199104ERRRRE
2100105RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008440468.10.0PREDICTED: transcription factor bHLH25-like
RefseqXP_008440469.10.0PREDICTED: transcription factor bHLH25-like
TrEMBLA0A1S3B1X40.0A0A1S3B1X4_CUCME; transcription factor bHLH25-like
STRINGXP_008440468.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2469333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-49bHLH family protein