PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C007657P2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | AP2 | ||||||||
Protein Properties | Length: 627aa MW: 69144.8 Da PI: 7.4684 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51 | 3.5e-16 | 290 | 349 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+a++ a++k++g MELO3C007657P2 290 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqsRKgRQVYLGGYDMEEKAARAYDLAALKYWG 349 78*******************988886678446*************************98 PP | |||||||
2 | AP2 | 46.9 | 6.6e-15 | 392 | 443 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g MELO3C007657P2 392 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 443 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.98E-22 | 290 | 357 | No hit | No description |
Pfam | PF00847 | 6.1E-13 | 290 | 349 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-17 | 290 | 359 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.203 | 291 | 357 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.6E-29 | 291 | 363 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.1E-16 | 291 | 358 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-6 | 292 | 303 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.44E-17 | 392 | 452 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 7.4E-10 | 392 | 443 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.41E-25 | 392 | 453 | No hit | No description |
PROSITE profile | PS51032 | 19.072 | 393 | 451 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.2E-34 | 393 | 457 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.9E-18 | 393 | 451 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-6 | 433 | 453 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007276 | Biological Process | gamete generation | ||||
GO:0010492 | Biological Process | maintenance of shoot apical meristem identity | ||||
GO:0042127 | Biological Process | regulation of cell proliferation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 627 aa Download sequence Send to blast |
MNNVNGNNCN WLGFSVSPNV NMELSSSAAT SVSPSIPANL FHSPSQFNYG ICYGVDGEHG 60 GFYSPLSAMP LKSDGSICSM EALSRQHPQV VSSTTPKLED FFGGATMGSH HYESNDREAM 120 ALSLDSIFCH QNPTHEPNNQ SFAHFSSLRS RELMLQDSKV ILPDGCNLQQ QQHPAVAQSD 180 ISGMKNWAVP RNYAATNNGS FEQKMVSCMS ENGGESGSIN AMAYGDLQSL SLSMTMSPSS 240 QSSCVTATQH VSPAMTDCSA MDTKKRGHEK VDQKQIVHRK SLDTFGQRTS QYRGVTRHRW 300 TGRYEAHLWD NSCKKEGQSR KGRQVYLGGY DMEEKAARAY DLAALKYWGP STHINFPLEN 360 YQKELEEMKN MSRQEYVAHL RRRSSGFSRG ASIYRGVTRH HQHGRWQARI GRVAGNKDLY 420 LGTFSTQEEA AEAYDIAAIK FRGMNAVTNF DITRYDVERI IASSTLLSGD LAKRKPEFDN 480 ESLRQSPSTH NSNSEAMPLP SQSSSQSESD WKMALYQSSQ QLIPKPRMLS AINDDGSQLG 540 VEDSARMGAH FSNASSMVTS CSLSSSREES PDKTSLSMVF GMPQSTSKPF ATSANNMNTS 600 WIASAQQIRA ANCMSQLPVF AAWTDT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00088 | SELEX | Transfer from AT4G37750 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681875 | 0.0 | LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007. | |||
GenBank | LN713262 | 0.0 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008440435.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor ANT isoform X2 | ||||
Swissprot | Q38914 | 1e-172 | ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT | ||||
TrEMBL | A0A1S3B138 | 0.0 | A0A1S3B138_CUCME; AP2-like ethylene-responsive transcription factor ANT isoform X2 | ||||
STRING | XP_008440434.1 | 0.0 | (Cucumis melo) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-147 | AP2 family protein |