PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C007656P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GRF
Protein Properties Length: 573aa    MW: 62118 Da    PI: 7.8082
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C007656P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.72.4e-24224268145
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                     d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e 
  MELO3C007656P1 224 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHINRGRHRSRKPVEG 268
                     79****************************************985 PP
2QLQ56.31e-19155191137
             QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                     ++FT +Q+ +L++Q+l+yKyL++n+PvP++Ll +++k
  MELO3C007656P1 155 GPFTQSQWVELEHQALIYKYLSSNVPVPSNLLIPLKK 191
                     59*******************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009519.3E-12155191IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.221156191IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.0E-14156189IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.287224268IPR014977WRC domain
PfamPF088797.2E-21225267IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0048364Biological Processroot development
GO:0048366Biological Processleaf development
GO:0061062Biological Processregulation of nematode larval development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MDFGVVGLDS FVDSSDAPSP HPASDPDTNL KSLGSAFSKQ DRSGFVDDDW RNSKIPKTET  60
VSASSKTMPL HQGFPLLRSN TLLSSDGRQK EHMLSFSSVK SETSLQNKDS DLISRNTQNS  120
IFPYNQQKSS VYSRNTGCVS GSYSSMHGPV AGIRGPFTQS QWVELEHQAL IYKYLSSNVP  180
VPSNLLIPLK KSLYPYGLTC SSAGSLPPNT RWGSFHLGFS GNADPEPGRC RRTDGKKWRC  240
SRDAVADQKY CERHINRGRH RSRKPVEGQT GHSAPGTTNP TAMVATMSTS LSSTVMPSGG  300
ASNNLPIIQR QLKSLHPVAT SDPGADASVN RLLNKETVCS RIQESGGLSM MSSTVNLMSS  360
NDKSGAKQEI SIGESTQSEF GLVSTDSLLN PSQRGSYPNP KNYDSFLIFN DQESQDQDQH  420
PLRQFFEDWP KDQSTRSVMT WPEEFKSDWT QLSMSIPMSD FSSSSSSPTH EKLAQSPLRL  480
SRELEPIQMN LGVSRNDGEL VQKQGSQITM SWGSSMGGPL GEALTNGSSC VKASKVPPSL  540
NLLAEGWDGG QLGSSPTGVL QKATFCSLSN SS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016899159.10.0PREDICTED: growth-regulating factor 1-like
TrEMBLA0A1S4DT460.0A0A1S4DT46_CUCME; growth-regulating factor 1-like
STRINGXP_008440426.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20853481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.11e-108growth-regulating factor 1