PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C007620P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family LBD
Protein Properties Length: 233aa    MW: 25560.8 Da    PI: 7.701
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C007620P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26096.92.1e-302103197
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C+++C+l+p++      ++q +++ +v+k+FG++ ++++++a+pe++r+ +++sl++eA+ r+ +Pv+Gavg++++++++++q+
  MELO3C007620P1   2 SCNGCRVLRKGCSESCILRPCLqwidtSEAQGHATVFVAKFFGRAGLMSFISAVPESQRPSLFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQA 96 
                     6*********************9998777889*************************************************************** PP

          DUF260  91 kaelall 97 
                     +++++l+
  MELO3C007620P1  97 AVDTVLR 103
                     9998775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.7311107IPR004883Lateral organ boundaries, LOB
PfamPF031957.0E-262100IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSESCILR PCLQWIDTSE AQGHATVFVA KFFGRAGLMS FISAVPESQR  60
PSLFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQAAVDT VLRGGTLRPI NDFLAAGSPN  120
LASDDTSETE VACTDMWKIR DSYPNSRFSN SRSRLSPKRK RSEESSTKHQ LNDLDLRLTP  180
TFPAKSTLRA ATPSMNSEES ETTTCFESGL GDNHHHYPEE GTAQRKLLNL FV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008440364.11e-174PREDICTED: LOB domain-containing protein 37-like
SwissprotQ9SN233e-87LBD38_ARATH; LOB domain-containing protein 38
TrEMBLA0A1S3B1K41e-172A0A1S3B1K4_CUCME; LOB domain-containing protein 37-like
STRINGXP_008440364.11e-173(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.13e-79LOB domain-containing protein 37