PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C007570P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 385aa    MW: 42147.7 Da    PI: 4.5452
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C007570P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.31e-061532022055
                     HHHHHCTSCCC.................TTS-STCHHHHHHHHHHHHHHH CS
             HLH  20 feeLrellPkas..............kapskKlsKaeiLekAveYIksLq 55 
                     +e L e lP+ +              ++ s+K +Ka++L +A+eY+k+Lq
  MELO3C007570P1 153 LEALVEELPTKPnprssskrsraaevHNLSEKTDKASMLDEAIEYLKQLQ 202
                     566666677744477788888888888889*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.44E-6139206No hitNo description
SMARTSM003530.0017147207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.95E-8178212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-7178212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MDHSIPNNCD RNACTSSTWT LPAAATAVSS SSPPDDISLF LQQIMRRSSS SAPHFSLLSP  60
SPSIFSELTC NIRAFTPPTH NIPPPYGQLN AVPDEISAVD SSEQFANSPS SGVLHDPLRP  120
CPTSIPPNAS STSVGASDHN ENDEFDCESE EGLEALVEEL PTKPNPRSSS KRSRAAEVHN  180
LSEKTDKASM LDEAIEYLKQ LQLQVQMLSM RNGLSLHPMN SPGSLQYLQL SHMRMDFGEE  240
NRSISSDQDR PNQIFLSLPD QKTAPIHPFM SDIGRTNAAE TPFDLVPPIQ AHLVPFYLSE  300
SSKSKEDCSR DLLRDDHQAV NVNVSQSERT PLASCPYNIP ETPDLQGLQN GVSVEPCIIE  360
RNRSDVLLNY TPEHSLVYPS PFNG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008440296.10.0PREDICTED: transcription factor SPATULA
RefseqXP_016899207.10.0PREDICTED: transcription factor SPATULA
TrEMBLA0A1S3B0R80.0A0A1S3B0R8_CUCME; transcription factor SPATULA
STRINGXP_008440296.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22763379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.16e-19bHLH family protein