PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C007527P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | Dof | ||||||||
Protein Properties | Length: 240aa MW: 24540.3 Da PI: 8.3343 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 122.9 | 1.1e-38 | 27 | 87 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++l+cprCdstntkfCyynny+ sqPr+fCk+CrryWt+GG+lr++PvGgg+rkn k+s MELO3C007527P1 27 EQEHLPCPRCDSTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPVGGGSRKNAKRS 87 57889****************************************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-29 | 2 | 85 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.1E-33 | 29 | 85 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.264 | 31 | 85 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 33 | 69 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MPSDAGDHRK APTKPLASGS GVCPPPEQEH LPCPRCDSTN TKFCYYNNYN FSQPRHFCKS 60 CRRYWTHGGT LRDIPVGGGS RKNAKRSRTC IPASAAIVSS SSSGSFSNSA SRMDHHPLPA 120 TPVLVPLGGG VGGDLKVGGG NMCGSITSLL NTHAPGFWSL GGFGLGLGSG FEDVGYGAAS 180 SRVAWPFLGL GDGGAGVGGH GGTPNTWQFE NGDAAGFVGS ADCLSWPELA ISTPGNGLK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00593 | DAP | Transfer from AT5G66940 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681875 | 0.0 | LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007. | |||
GenBank | LN713262 | 0.0 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008440229.1 | 1e-173 | PREDICTED: dof zinc finger protein DOF3.4 | ||||
Swissprot | Q9FGD6 | 2e-56 | DOF58_ARATH; Dof zinc finger protein DOF5.8 | ||||
TrEMBL | A0A1S3B0L0 | 1e-172 | A0A1S3B0L0_CUCME; dof zinc finger protein DOF3.4 | ||||
STRING | XP_008440229.1 | 1e-173 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2801 | 31 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50410.1 | 6e-50 | OBF binding protein 1 |
Publications ? help Back to Top | |||
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