PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C007500P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family TALE
Protein Properties Length: 672aa    MW: 73722.7 Da    PI: 6.8267
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C007500P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.55.4e-094815181954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   ++yps +++  LA+++gL+ +qV++WF N R +
  MELO3C007500P1 481 FEHflHPYPSDADKLLLARQTGLSRNQVSNWFINARVR 518
                     664559******************************88 PP
2BELL115.82.1e-37341412172
            BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     +r e+q++k+kLls+l+eV++rY+ y+eq+q+v++sF+ v+g g+a+pYt+l +ka+SrhFrcLkdaiaeq+
  MELO3C007500P1 341 DRIEHQRRKVKLLSMLDEVERRYNLYREQMQMVVNSFDLVMGFGAAAPYTTLTQKAMSRHFRCLKDAIAEQL 412
                     589*******************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.4E-73270410IPR006563POX domain
PfamPF075262.0E-49275409IPR006563POX domain
PROSITE profilePS5007112.519459522IPR001356Homeobox domain
CDDcd000861.28E-12462523No hitNo description
SMARTSM003895.3E-10462526IPR001356Homeobox domain
SuperFamilySSF466891.8E-17463530IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.3E-28465528IPR009057Homeodomain-like
PfamPF059207.1E-18479518IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 672 aa     Download sequence    Send to blast
MSHDYHHQGI FTFSNATFDK SNPSSLPAQH IRPDKLRLES FSDSIPPPPS HLVGIDEHHH  60
QQQLHHVYAS PSSGGTMLSD MFNFPPTTPS AAATTVDFSD NFRTLRPPNS ASAMQLFLMN  120
PPPPPQAQPR SPSPPSTSST LHMLLPNPPA NPLQGFEGGV GVGDQTTAFG QFAVVESQGL  180
SLSLHSSSLQ HLEDGAVAKA DELRIRDGGI LYNYNNNNQV HGDGGSGSTS SILQYSFRNN  240
ENSPHSFQAN SQIMNNPNNH QVQIGFGSSL GVVNVLRNSK YVKPAQELLE EFCSVGKVQL  300
KKNKFNIKPN PNTESATTAT TSAAATGGST SKDQPPLSAA DRIEHQRRKV KLLSMLDEVE  360
RRYNLYREQM QMVVNSFDLV MGFGAAAPYT TLTQKAMSRH FRCLKDAIAE QLKQSYEALG  420
EKGGNGGSGI TKGETPRLKL LEQSLRQQRA FHQMGMMEQE AWRPQRGLPE RSVNILRAWL  480
FEHFLHPYPS DADKLLLARQ TGLSRNQVSN WFINARVRLW KPMVEEMYQL EGKVDTDQQS  540
QEDTPQNNNN NNNNNNKTQN NAITNPQNPT TAAVEEVAAE FAAGHDYSDL HDVWRHGSSG  600
SDHHQQHYGT MSEDVTAAAD MNPGPTLIRF GTTNTATGDV SLTLGLRHAG NTSAAAAVDN  660
PSFSLRDFGQ S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A5e-16468526563Homeobox protein Meis2
3k2a_B5e-16468526563Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008440170.10.0PREDICTED: BEL1-like homeodomain protein 4
TrEMBLA0A1S3B1820.0A0A1S3B182_CUCME; BEL1-like homeodomain protein 4
STRINGXP_008440170.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35243257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23760.31e-128BEL1-like homeodomain 4