PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C007458P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WRKY
Protein Properties Length: 153aa    MW: 17878.4 Da    PI: 10.2668
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C007458P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.51.2e-3270128159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vk++ +prsYYrCt ++C+vkk+ver a+dp++v++tYeg+H h+
  MELO3C007458P1  70 LDDGYKWRKYGQKVVKNTLHPRSYYRCTEENCKVKKRVERLADDPRMVITTYEGRHAHS 128
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.6E-3455128IPR003657WRKY domain
SuperFamilySSF1182903.66E-2962129IPR003657WRKY domain
PROSITE profilePS5081129.3165130IPR003657WRKY domain
SMARTSM007747.5E-3870129IPR003657WRKY domain
PfamPF031062.9E-2671127IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MQVREIRDER GLSFMRGRNA IGNYGGDDDK ENDGKPRLRV STMKMKRIKG RKKVREPRFS  60
FKTMTDVDVL DDGYKWRKYG QKVVKNTLHP RSYYRCTEEN CKVKKRVERL ADDPRMVITT  120
YEGRHAHSPS DHNLEDPIMG HLPSSHLTSF FC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-2761127874Probable WRKY transcription factor 4
2lex_A4e-2761127874Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9840310.0GU984031.1 Cucumis sativus WRKY protein (WRKY43) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016899208.11e-107PREDICTED: probable WRKY transcription factor 12 isoform X1
SwissprotQ9SVB74e-52WRK13_ARATH; Probable WRKY transcription factor 13
TrEMBLA0A1S4DTC31e-105A0A1S4DTC3_CUCME; probable WRKY transcription factor 12 isoform X1
STRINGXP_008440122.11e-106(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40793361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.12e-54WRKY DNA-binding protein 13