PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C007409P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WRKY
Protein Properties Length: 623aa    MW: 67214.4 Da    PI: 7.2188
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C007409P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.11.2e-30351409259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+
  MELO3C007409P1 351 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDRTILITTYEGNHNHP 409
                     7*********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-33335411IPR003657WRKY domain
SuperFamilySSF1182901.12E-27343411IPR003657WRKY domain
PROSITE profilePS5081129.677345411IPR003657WRKY domain
SMARTSM007741.2E-36350410IPR003657WRKY domain
PfamPF031062.1E-26352409IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 623 aa     Download sequence    Send to blast
MDKGWGLTLR DSDHQSIGFF SNKQPPPPPP PTLNSFQRMF QGLEFSAKLG HTDSTSDDNN  60
RLAVEVDFFS AKKRLVDDLE ADQDSKPTST TSIIKDDKAL TPPPPPTTSF NLVNTGLHLL  120
TANTGSHQST VDDGISSDGE DKRAKNELAQ LQVELQRMNA ENHKLRDMLS HVSNNYSSLQ  180
MHLLTLMQQQ QQQQNHSSEP ANQREIAGEK KSTEIKHEVG KVMVPRQFMD LGPSGNNNNM  240
GESEELLCNS SSDERTRSGS PLNINNNNTE TASKKRDHAE IMPPNSDHEN SKRSIPREDS  300
PESESQGWGP NHKTPRFNNS SNSKPIDQST EATMRKARVS VRARSEAPMI SDGCQWRKYG  360
QKMAKGNPCP RAYYRCTMAV GCPVRKQVQR CAEDRTILIT TYEGNHNHPL PPAAMAMAST  420
TTAAATMLLS GSMSSADHNL MNPNLLARAI LPCSSSMATI SASAPFPTIT LDLTHSPNPL  480
QFQRPTAAPF HVPFPGGQPP SAAAQLPQVL GQALYNNQSK FSGLQLSHEM GANSSPLGHH  540
QITQPATPAQ PGGASFADTL SAATAAITAD PNFTAALAAA ISSIIGGTHP NNNSNTNTSN  600
NTTTNNNGSS NNNSKISSFP GN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-21337413176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269|PubMed:25733771}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00428DAPTransfer from AT4G04450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008440027.10.0PREDICTED: probable WRKY transcription factor 31
SwissprotQ9XEC31e-151WRK42_ARATH; WRKY transcription factor 42
TrEMBLA0A1S3B0450.0A0A1S3B045_CUCME; probable WRKY transcription factor 31
STRINGXP_008440027.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF86634121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.11e-123WRKY family protein