PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C007351P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | GeBP | ||||||||
Protein Properties | Length: 218aa MW: 24244.7 Da PI: 9.5706 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 97 | 1.9e-30 | 1 | 79 | 19 | 97 |
DUF573 19 lidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 +id+ a++g++ps d++af++f+kks++++v+k ql++KirrLKkK++++ ++ k+g +p+fsk+h+qk felsk+iWg MELO3C007351P1 1 MIDYSAEKGSDPSLDMNAFHDFIKKSLHVDVTKAQLMDKIRRLKKKYRNNADRGKKGADPTFSKAHEQKGFELSKRIWG 79 9*****************************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 2.8E-26 | 1 | 79 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MIDYSAEKGS DPSLDMNAFH DFIKKSLHVD VTKAQLMDKI RRLKKKYRNN ADRGKKGADP 60 TFSKAHEQKG FELSKRIWGG EGILRTPAVE QLKPNANGTP KKNQRGNTSK ALASLKADLL 120 PSPDAPKEDD SMKVDDCEAP SGCMDGFVAF ERSLGAVGLP ESFLKPGLEL IGQSKRTELE 180 EEWKKLHLAE LELFLKRTEL IRDQTKLILD AYKSSSK* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681875 | 0.0 | LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007. | |||
GenBank | LN713262 | 0.0 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008439944.1 | 1e-159 | PREDICTED: mediator-associated protein 1 | ||||
TrEMBL | A0A1S3B0Q1 | 1e-158 | A0A1S3B0Q1_CUCME; mediator-associated protein 1 | ||||
STRING | XP_008439944.1 | 1e-158 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1831 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25210.1 | 1e-28 | DNA-binding storekeeper protein-related transcriptional regulator |