PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C007341P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 403aa    MW: 43992.6 Da    PI: 5.1506
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C007341P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.99.8e-052993311754
                     HHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  17 NsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++   L++l+ +      +K + a++L +A+eYIk L
  MELO3C007341P1 299 GDRVTALQQLVSPF-----GKTDTASVLHEAIEYIKFL 331
                     55666677777776.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.668282331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.19E-5292335No hitNo description
SuperFamilySSF474591.83E-9292337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-7296335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042631Biological Processcellular response to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071472Biological Processcellular response to salt stress
GO:2000214Biological Processregulation of proline metabolic process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MAEDFQAPIC GDNWWNSSRS MLVAVGGLSP CSVGIADLSW PPQPPSAATD SVNNNSSMLF  60
QDYSTFQMMG FALSSSTTSE HWNQSQDLLN SNGIPTNFSS ENGLKQGNDG DDYLNCSSTN  120
TTNCQGGLFP VESSLYGYSS PSTKLLQTNL YEDDNSDPRS LFNSTPSITT NSTTFPTNIN  180
PPNHLSLSST PNFSSNYLVK PSLSNPQPHL QFTNNTPFWN ASSSNSIPQG IASLLEDKNN  240
PKSQNNTLAF KSMNEDGQDQ VKKVDKNSAI TTEPTVFKRP RIETPSPLPT FKVRKEKLGD  300
RVTALQQLVS PFGKTDTASV LHEAIEYIKF LHDQVLSTPY MKNSNGITPV QHQQVSEKAN  360
QDSPKQDLKS RGLCLVPISS TFPVTNASPT DFWTPTFGGT FR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008439936.10.0PREDICTED: transcription factor bHLH112-like isoform X2
TrEMBLA0A1S3AZZ20.0A0A1S3AZZ2_CUCME; transcription factor bHLH112-like isoform X2
STRINGXP_008439935.10.0(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.34e-54bHLH family protein