PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C007286P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

HSF

Protein Properties

Length: 199aa MW: 23115.8 Da PI: 5.4069

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C007286P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	95.3	6.4e-30	12	129	2	102
HHHHHHHHHCTG..........................GGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSB CS HSF_DNA-bind 2 Flkklyeilede..........................elkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeek 70 Fl+k+y++le++ ++++sw+++g+ f+v+ + +f++ +LpkyFkh+nf+SF+RQLn+YgFkk+++++ MELO3C007286P1 12 FLSKTYDLLEEAgsfhfkeadqedededeeeeeeeeenGGNRIVSWNAEGSGFIVWSPADFSELLLPKYFKHNNFSSFIRQLNTYGFKKTSSKR- 105 788888888844444444445555555556666665557899**********************************************9998. PP TTTTXTTSEEEEESXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 71 kskskekiweFkhksFkkgkkellekikrkks 102 weFkh++F++gk+++l +i rkk MELO3C007286P1 106 --------WEFKHEKFQRGKRHMLVEIVRKKC 129 ........*******************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	6.0E-34	4	122	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	5.3E-36	8	127	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	1.6E-27	12	127	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	9.52E-24	50	127	IPR011991	Winged helix-turn-helix DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MQSSRTRNPA PFLSKTYDLL EEAGSFHFKE ADQEDEDEDE EEEEEEEENG GNRIVSWNAE 60 GSGFIVWSPA DFSELLLPKY FKHNNFSSFI RQLNTYGFKK TSSKRWEFKH EKFQRGKRHM 120 LVEIVRKKCE PSVFPAFLRS SHEGGATMAV NQENGDHLLL MEENNNLRRQ KLELQAQIAQ 180 FKALHIRLLD CLGQCIEK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hdk_A	2e-14	47	127	19	110	Heat shock factor protein 2
5hdk_B	2e-14	47	127	19	110	Heat shock factor protein 2
5hdk_C	2e-14	47	127	19	110	Heat shock factor protein 2
5hdk_D	2e-14	47	127	19	110	Heat shock factor protein 2
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681875	1e-172	LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBank	LN713262	1e-172	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008439862.1	1e-146	PREDICTED: heat stress transcription factor B-2a-like
TrEMBL	A0A1S3AZS2	1e-145	A0A1S3AZS2_CUCME; heat stress transcription factor B-2a-like
STRING	XP_008439862.1	1e-145	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11357	28	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62020.1	2e-35	heat shock transcription factor B2A