PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C007275P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | Dof | ||||||||
Protein Properties | Length: 241aa MW: 25943.8 Da PI: 8.8403 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 120.3 | 7.1e-38 | 19 | 77 | 3 | 61 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 + +kcprCds ntkfCyynnyslsqPry+Ck+CrryWt+GG+lrnvPvGgg+rk k+ MELO3C007275P1 19 PQPQKCPRCDSLNTKFCYYNNYSLSQPRYLCKTCRRYWTHGGTLRNVPVGGGCRKGKRL 77 5789***************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 5.5E-33 | 21 | 76 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.491 | 22 | 76 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 1.0E-23 | 23 | 76 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 24 | 60 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MQYQDRRLKS VQVQDQVQPQ PQKCPRCDSL NTKFCYYNNY SLSQPRYLCK TCRRYWTHGG 60 TLRNVPVGGG CRKGKRLKQS SQSSNNNSSV KSSLVQTSAS PVLPPPQIVP LSLSTTTSQH 120 VIFSGTPVIT PPSFFNSGGE LLSSSSWINS FGSSSQGPEI IYDMMDQSSG KADANSSSPA 180 AGWSESYINN NSISNPMAAT GDAVVWPAGE NNATLAAATS TNNATINQWP DYMPGFCPPP 240 * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681875 | 0.0 | LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007. | |||
GenBank | LN713262 | 0.0 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008439844.1 | 1e-177 | PREDICTED: dof zinc finger protein DOF1.4-like | ||||
TrEMBL | A0A1S3B0F1 | 1e-175 | A0A1S3B0F1_CUCME; dof zinc finger protein DOF1.4-like | ||||
STRING | XP_008439844.1 | 1e-176 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4145 | 32 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60850.1 | 2e-32 | OBF binding protein 4 |