PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C007274P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | Dof | ||||||||
Protein Properties | Length: 254aa MW: 27727.6 Da PI: 9.706 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124 | 4.9e-39 | 23 | 79 | 5 | 61 |
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +lkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+ MELO3C007274P1 23 TLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRL 79 689***************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 4.0E-28 | 15 | 78 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 9.3E-34 | 23 | 78 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.525 | 24 | 78 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 26 | 62 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MASSSRIMDK PRHHQQQQSS SGTLKCPRCD SSNTKFCYYN NYSLSQPRHF CKACKRYWTR 60 GGTLRNVPVG GGCRKNKRLK TSSSSSSSSL VNANSTSTPS QNPRLLLHTS INSTTAPNIV 120 SSSALNHTNS SMFFGLDSIG GGGGGLGFSS SGLLSHFNNP HQQPFNSNHF HHPTISFDRN 180 SHLLGNIDPN LMTSMKEIKI EDLNRLCQNQ TEQIDLSNFS DPSSIYWNSG TTTATGNWHD 240 PTNYNGSSVA SLF* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681875 | 0.0 | LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007. | |||
GenBank | LN713262 | 0.0 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008439843.1 | 0.0 | PREDICTED: dof zinc finger protein DOF1.7-like | ||||
TrEMBL | A0A1S3B0B7 | 0.0 | A0A1S3B0B7_CUCME; dof zinc finger protein DOF1.7-like | ||||
STRING | XP_008439843.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4522 | 33 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28310.2 | 3e-35 | Dof family protein |