PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C007273P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | SBP | ||||||||
Protein Properties | Length: 108aa MW: 11739.8 Da PI: 5.1624 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 75.4 | 9.7e-24 | 56 | 103 | 1 | 48 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr 48 +Cq++gC+adl+ a+ yhrrhkvCe+h+ka+vv+++gleqrfCqqCs MELO3C007273P1 56 RCQADGCNADLTGARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCSS 103 6*********************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 5.5E-25 | 49 | 102 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 19.512 | 54 | 107 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 5.1E-23 | 55 | 104 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 7.5E-19 | 57 | 103 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 108 aa Download sequence Send to blast |
MANSNDHSWE DMILDDDDDD DNDTEEVGFV DNERRRRSGL TTGRGGGGGG RSTVARCQAD 60 GCNADLTGAR PYHRRHKVCE FHAKAAVVIL AGLEQRFCQQ CSSIGIR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-18 | 47 | 104 | 1 | 58 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene. | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. Binds specifically to the 5'-GTAC-3' core sequence. Involved in development and floral organogenesis. Required for ovule differentiation, pollen production, filament elongation, seed formation and siliques elongation. Also seems to play a role in the formation of trichomes on sepals. May positively modulate gibberellin (GA) signaling in flower. {ECO:0000269|PubMed:12671094, ECO:0000269|PubMed:16095614, ECO:0000269|PubMed:17093870}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681875 | 1e-172 | LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007. | |||
GenBank | LN713262 | 1e-172 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008439842.1 | 4e-70 | PREDICTED: squamosa promoter-binding protein 1 | ||||
Swissprot | Q38741 | 1e-21 | SBP1_ANTMA; Squamosa promoter-binding protein 1 | ||||
Swissprot | Q8GXL3 | 4e-20 | SPL8_ARATH; Squamosa promoter-binding-like protein 8 | ||||
TrEMBL | A0A1S3AZN8 | 9e-69 | A0A1S3AZN8_CUCME; squamosa promoter-binding protein 1 | ||||
STRING | XP_008439842.1 | 2e-69 | (Cucumis melo) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02065.2 | 3e-23 | squamosa promoter binding protein-like 8 |
Publications ? help Back to Top | |||
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