PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C007192P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family HSF
Protein Properties Length: 406aa    MW: 47221.4 Da    PI: 6.0947
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C007192P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.32.8e-34141052102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+ye+++d++++ ++sw++ ++sf+v+++ ef+ ++Lp++Fkh+nf+SF+RQLn+YgF+kv+ e+         weF+++ F+kg+ +ll++
  MELO3C007192P1  14 FLTKTYEMVNDPSTDPIVSWTSGNKSFIVWNPLEFSCELLPRFFKHNNFSSFIRQLNTYGFRKVDPEK---------WEFANEDFEKGRPDLLRN 99 
                     9****************************************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+r+k 
  MELO3C007192P1 100 IHRRKP 105
                     ***985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.2E-37497IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.72E-3410103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.9E-5810103IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.3E-3014103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.6E-191437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.6E-195264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.6E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MDESQCSSNT LPPFLTKTYE MVNDPSTDPI VSWTSGNKSF IVWNPLEFSC ELLPRFFKHN  60
NFSSFIRQLN TYGFRKVDPE KWEFANEDFE KGRPDLLRNI HRRKPVHSHS LQNVQGQGFP  120
TPLLDLERKR FKEEIERLNQ TNEKLLLESQ RHEQEHRDFQ LQMRLMKERF ENMQQQQQIL  180
LSHVARVLQK PELTIYFVPE SDSHDRKRRL TTVSYYYNES SAEDDLAEHS HSMSKQQIDY  240
SLTSDLNMEQ LDQLDSSLSF WERTIHDVDH AIFLSNMKFN QTKRDIQSPP TPLQLERSHH  300
SKSHVIDMNS EPVGSIASDS IASRKEADET TASARNGAND VFWEQFLTEN PGSSDLPKVA  360
SEGKDSDNGR KNESKSRGFG KLWWTGNKIN NLAEQMEHLT PTEKT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-22910324129Heat shock factor protein 1
5d5v_B2e-22910324129Heat shock factor protein 1
5d5v_D2e-22910324129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204209DRKRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008439712.10.0PREDICTED: heat stress transcription factor A-4c-like
TrEMBLA0A1S3B0390.0A0A1S3B039_CUCME; heat stress transcription factor A-4c-like
STRINGXP_008439712.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35683361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.13e-99heat shock transcription factor A4A