PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C007148P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 299aa MW: 33120.9 Da PI: 8.4654 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 58.5 | 8.6e-19 | 26 | 74 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+i n+ r +tfskRr gi KKA+EL +LC+aev v++fs+ gk + + MELO3C007148P1 26 KKIVNEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF 74 6789999*************************************97776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 6.3E-29 | 18 | 77 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 24.306 | 18 | 78 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.69E-30 | 19 | 87 | No hit | No description |
SuperFamily | SSF55455 | 3.27E-25 | 19 | 94 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.4E-19 | 20 | 40 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.0E-23 | 27 | 74 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.4E-19 | 40 | 55 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.4E-19 | 55 | 76 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MDSSTPIAPV ASNKKQTKGR QKIEMKKIVN EDDRLITFSK RRSGIYKKAS ELATLCGAEV 60 GVVVFSPAGK PFSFAHPCIE TIANKFLNDK NKKNKGNKDD NNNNDDSSSS SNNNSNNKIS 120 INNNAAHPLV EAHRRVRINE LNQQHNQLLS QLDAEKEKGK ALEKLKKVRG NGRGWWETPT 180 EELGIDELQE VDASFGEIYS NVCHQLKQRG VIGCCSYNNY NNNITNSPMG FTTNDQLGEE 240 TIPFNILAGN VPPPLFPPPP PPYLPPHPHF DYGENNNNNN KQQINSSSSN NILILIQS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681875 | 0.0 | LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007. | |||
GenBank | LN713262 | 0.0 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011658286.1 | 1e-132 | PREDICTED: agamous-like MADS-box protein AGL61 | ||||
TrEMBL | A0A0A0KNT7 | 1e-131 | A0A0A0KNT7_CUCSA; Uncharacterized protein | ||||
STRING | XP_008439651.1 | 1e-150 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 2e-26 | AGAMOUS-like 61 |