PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MELO3C007121P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 453aa MW: 49119.1 Da PI: 9.4509 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 115.7 | 6e-36 | 85 | 234 | 2 | 134 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...............ssssasec...eaess 78 g+kdrhsk+ T++g+RdRRvRls+ +a++f+dLqd+LGf ++sk++eWL+++a aikel+++ + ++++ MELO3C007121P1 85 SGGKDRHSKVWTSKGLRDRRVRLSVATAIQFYDLQDRLGFEQPSKAVEWLIKAAADAIKELPSLnasfpetpkqlsgekF------SvtdQPGTL 173 689*************************************************************7777655443333320......123322222 PP TCP 79 sssas.nsssgkaaksaakskksqksaasalnlak....esrakarararertrekmrikn 134 s ++ +s+ + + +++a+s++s++s+ s l+l++ r kar+ra+er ++++ +++ MELO3C007121P1 174 DSVEQkQSQLHVSLSKSACSSNSETSKGSGLSLSRsevrVNRLKARERAKERAQKEKEKEQ 234 2222212233344555556677777777777777653335669999999996655554443 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.4E-40 | 86 | 232 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.662 | 87 | 145 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 8.617 | 212 | 230 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:1903508 | Biological Process | positive regulation of nucleic acid-templated transcription | ||||
GO:2000306 | Biological Process | positive regulation of photomorphogenesis |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 453 aa Download sequence Send to blast |
MEVVDNIQEQ PRKFPRLANG RSSDSNEIGL KGAENVRRGD EKDKESKRDG GITGVGGGGV 60 GGADDETNRL RGWHHSRIIR VSRASGGKDR HSKVWTSKGL RDRRVRLSVA TAIQFYDLQD 120 RLGFEQPSKA VEWLIKAAAD AIKELPSLNA SFPETPKQLS GEKFSVTDQP GTLDSVEQKQ 180 SQLHVSLSKS ACSSNSETSK GSGLSLSRSE VRVNRLKARE RAKERAQKEK EKEQDSSRIT 240 DHNLSSMTRN SSFTELLAGG AASVSTHRDA GVAAERQWQS STVAMDYFSS GILEPSTSRT 300 HHSSGFSDQM NLGTSLPQSM SSTPLFSSVS TGDSNAEQLH QFSFVHDGNI VPVATTQPGG 360 GNDYSLNFTI SSNLPGYYRG TLQSNSSLLP HLQRFSPVDG SNLPFLFGAA TSAAPQLENH 420 NHYQFSPAFD GRLQLCYGGG NRQSEQKGKG KD* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 7e-22 | 92 | 146 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 7e-22 | 92 | 146 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). Participates in ovule develpment (PubMed:25378179). Promotes light-regulated transcription of CHS, CAB, HYH and HY5. Regulates positively photomorphogenesis (e.g. hypocotyl elongation inhibition and cotyledon opening in response to blue light) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179, ECO:0000269|PubMed:26596765}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00006 | PBM | Transfer from 493022 | Download |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW (PubMed:12931144). Induced by blue light. Stabilized by light but labile in darkness due to proteasome-dependent proteolysis (at protein level) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:26596765}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681875 | 0.0 | LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007. | |||
GenBank | LN713262 | 0.0 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008439614.1 | 0.0 | PREDICTED: transcription factor TCP2-like | ||||
Refseq | XP_008439615.1 | 0.0 | PREDICTED: transcription factor TCP2-like | ||||
Refseq | XP_008439616.1 | 0.0 | PREDICTED: transcription factor TCP2-like | ||||
Swissprot | Q93V43 | 2e-78 | TCP2_ARATH; Transcription factor TCP2 | ||||
TrEMBL | A0A1S3AZT2 | 0.0 | A0A1S3AZT2_CUCME; transcription factor TCP2-like | ||||
STRING | XP_008439614.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4019 | 31 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G18390.2 | 9e-73 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |
Publications ? help Back to Top | |||
---|---|---|---|
|