PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C007104P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ARF | ||||||||
Protein Properties | Length: 480aa MW: 53812.5 Da PI: 9.2287 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 77.4 | 1.6e-24 | 101 | 202 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F +++ MELO3C007104P1 101 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFI--WNE 191 99*****************************8544444..48************************************************..889 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 + +l+++++r+ MELO3C007104P1 192 KNQLLLGIRRA 202 9999****997 PP | |||||||
2 | Auxin_resp | 120.6 | 1.2e-39 | 227 | 310 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+seF+++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdld++rWpnS+Wrs+k MELO3C007104P1 227 AAHAAATNSRFTIFYNPRASPSEFIIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSTRWPNSHWRSVK 310 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.57E-49 | 86 | 230 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.2E-43 | 94 | 216 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.75E-23 | 100 | 201 | No hit | No description |
PROSITE profile | PS50863 | 12.576 | 101 | 203 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.0E-22 | 101 | 202 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.4E-24 | 101 | 203 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 8.7E-35 | 227 | 310 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 480 aa Download sequence Send to blast |
MCWPSLVSLP AVGSRVVYFP QGHSEQVAIS TNREVDAHIP SYPSLPPQLI CQLHNVTMHA 60 DIETDEVYAQ MTLQPLTAQE QKEPYLPAEL GAPSKQPTNY FCKTLTASDT STHGGFSVPR 120 RAAEKVFPPL DFSQQPPAQE LIARDLHDNE WKFRHIFRGQ PKRHLLTTGW SVFVSAKRLV 180 AGDSVIFIWN EKNQLLLGIR RANRPQTVMP SSVLSSDSMH LGLLAAAAHA AATNSRFTIF 240 YNPRASPSEF IIPLAKYVKA VYHTRVSVGM RFRMLFETEE SSVRRYMGTI TGISDLDSTR 300 WPNSHWRSVK VGWDESTAGE RQPRVSLWEI EPLTTFPMYP SPFPLRLKRP WPTGFPSFHG 360 LKEDDLGLNS QLMWLRGDGL DRGIQPLNFP GIGVAPWMQP RLDASMVGLQ PEIYQAMAAA 420 ALQEMRTVDP AKAQAASLLQ FQQTQNLPNR PATFMPPQML QLPQPQPQPQ PPQTSFSSR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-155 | 2 | 331 | 59 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF8. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB112673 | 0.0 | AB112673.1 Cucumis sativus CsARF3 mRNA for auxin response factor 3, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008439586.1 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: auxin response factor 6 | ||||
Swissprot | Q9ZTX8 | 0.0 | ARFF_ARATH; Auxin response factor 6 | ||||
TrEMBL | A0A1S3AYP4 | 0.0 | A0A1S3AYP4_CUCME; Auxin response factor | ||||
STRING | XP_008439586.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1765 | 34 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.1 | 0.0 | auxin response factor 6 |