PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C007048P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WRKY
Protein Properties Length: 520aa    MW: 57870.8 Da    PI: 6.6502
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C007048P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.59e-31265323259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  MELO3C007048P1 265 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 323
                     699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081132.96259325IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.4E-31261325IPR003657WRKY domain
SuperFamilySSF1182903.92E-26263325IPR003657WRKY domain
SMARTSM007741.4E-37264324IPR003657WRKY domain
PfamPF031061.2E-25266323IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MENYDQEVGD LTDIVRGRST TTTTRSSTTT TTTSSSSSNC KTEILADHHL QDSTSFYYSS  60
SSQLLQLQDH QDHHHHHQYS FGDPFCSVVA PSVLDHHLHQ HHHHQLVDNN TNINAFFNGI  120
SASAATTTAA AAHQDHEDHH EVMKSSPCNS NLFSRMLQIS PSSNKFQTIS SLTNNSPPPS  180
NFLISNHSPT TTTTPLHPDH HLHHFLHHHD QNNNNNNNNT SAALHISSPR NPPGIKRRKS  240
QARKVVCVPA PVAASSRPNG EVIPSDLWAW RKYGQKPIKG SPYPRGYYRC SSSKGCSARK  300
QVERSRTDPN MLVITYTSEH NHPWPTQRNA LAGSSRSSQH SSKNNTSTTT TTTSTTTQPN  360
SSKLLHHKNK QEVQEEEEDQ DHENNNNGTT TVLLSSTAAA DEEASNKNNN NVKEEEMIEN  420
ELMMSSTSEG GLIDEDHDFF ADLEELETDP LTLLFNTTTT TQQQQHQQQP PHKLEQIIKG  480
SAAAACLHDV VPFNHLFDWP PPPHQEQPPP SSPTNRGFY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B7e-25240326380Disease resistance protein RRS1
5w3x_D7e-25240326380Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008439520.10.0PREDICTED: probable WRKY transcription factor 35
TrEMBLA0A1S3AZL10.0A0A1S3AZL1_CUCME; probable WRKY transcription factor 35
STRINGXP_008439520.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2461133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.12e-52WRKY DNA-binding protein 35