PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C007017P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 65aa MW: 7426.65 Da PI: 10.9874 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 92.3 | 2.3e-29 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien + rqvtfskRr g++KK +ELSvLCda++a+i+fss+gkl+ey++ MELO3C007017P1 10 RIENRTTRQVTFSKRRGGLFKKTHELSVLCDAQIALIVFSSNGKLFEYCT 59 8***********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.5E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.076 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 7.48E-37 | 2 | 62 | No hit | No description |
SuperFamily | SSF55455 | 3.53E-29 | 2 | 61 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.4E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 65 aa Download sequence Send to blast |
MGRGKIAIRR IENRTTRQVT FSKRRGGLFK KTHELSVLCD AQIALIVFSS NGKLFEYCTQ 60 TTWY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-19 | 1 | 59 | 1 | 59 | MEF2C |
5f28_B | 1e-19 | 1 | 59 | 1 | 59 | MEF2C |
5f28_C | 1e-19 | 1 | 59 | 1 | 59 | MEF2C |
5f28_D | 1e-19 | 1 | 59 | 1 | 59 | MEF2C |
6byy_A | 1e-19 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6byy_B | 1e-19 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6byy_C | 1e-19 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6byy_D | 1e-19 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6bz1_A | 1e-19 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6bz1_B | 1e-19 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6bz1_C | 1e-19 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6bz1_D | 1e-19 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681875 | 1e-105 | LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007. | |||
GenBank | LN713262 | 1e-105 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011658351.1 | 3e-38 | PREDICTED: MADS-box protein FBP24 isoform X3 | ||||
Refseq | XP_011658354.1 | 2e-38 | PREDICTED: MADS-box protein FBP24 isoform X6 | ||||
Swissprot | Q9ATE5 | 9e-31 | FBP24_PETHY; MADS-box protein FBP24 | ||||
TrEMBL | A0A1S3AYU5 | 1e-36 | A0A1S3AYU5_CUCME; MADS-box protein FBP24 | ||||
STRING | XP_004158672.1 | 1e-37 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF119 | 33 | 360 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03710.3 | 6e-28 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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