PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C007004P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

FAR1

Protein Properties

Length: 683aa MW: 79088.5 Da PI: 7.4454

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C007004P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	84.2	2e-26	28	114	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY++YAk++GF ++k +s++s+ ++e+++++f C ++g++++++++ ++r++ ++gCka+++vk++++gkw+v++++++HnH+l p MELO3C007004P1 28 SFYRDYAKTMGFGTSKLSSRRSRASKEFIDAKFSCMRYGNKQQSDDA----INPRPSPKIGCKASMHVKRKNNGKWYVYSFVKDHNHDLLP 114 5**************************************999877....9**********************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.7E-24	28	114	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	10.608	443	479	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	5.2E-8	451	477	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.6E-7	454	481	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 683 aa Download sequence Send to blast
MDSSSIITNS FQEPCLGMEF DSHEHAYSFY RDYAKTMGFG TSKLSSRRSR ASKEFIDAKF 60 SCMRYGNKQQ SDDAINPRPS PKIGCKASMH VKRKNNGKWY VYSFVKDHNH DLLPSQVHLF 120 RSHRNIDPLK NDVRIRRRKN LAAISKLFSA YQNVDCLESF VRNQHDKGRT LVLESGDAHI 180 LLELFMHMQQ ENPKFFYAVD MNEEHQLRNV FWVDGKAMGE RAPKVILTDQ NTSIKAVIGA 240 VLPGTRHYFS LWYILEKIPK ELEFLSMWHE NFMEKFKKYV FKSWTKEEFE KRWQKLLDRF 300 NLREVEWMQH LYDDRAYWVP AFARDVSFAG LCTSSRMESL NSSFDKYVQI ETSLKEFIVR 360 YRDILEERYE EEAKANFDAW HESPELKSPS PFEKQMSLVY TYEIFKKFQM EVLGAAACHL 420 KKETEDETLA TYNVKDFEDG QNYVVECSHS NSDIYCSCRS FEYKGFLCRH AIIVLQMSGV 480 FSIPSKYILQ RWTNTAMSRN PINEKLDEVQ CKVRRFNDLC RRAIILGEEG SLSQESYDIA 540 LSAINEALKQ CATVSRSSSA ESDVRSDTSA MLVFGIEDNQ CNNNLAVDNA PDLKVINAKK 600 IPNLAGSSNE PAVNESNKNR KVSQPFATNA GSRDDFNQME LSDMRPIQLN GISPTQLHNM 660 VPTLLQFHSM SSSHLHEDRL PR*

Sequence ? help Back to Top

Protein Sequence Length: 683 aa Download sequence Send to blast

MDSSSIITNS FQEPCLGMEF DSHEHAYSFY RDYAKTMGFG TSKLSSRRSR ASKEFIDAKF  60
SCMRYGNKQQ SDDAINPRPS PKIGCKASMH VKRKNNGKWY VYSFVKDHNH DLLPSQVHLF  120
RSHRNIDPLK NDVRIRRRKN LAAISKLFSA YQNVDCLESF VRNQHDKGRT LVLESGDAHI  180
LLELFMHMQQ ENPKFFYAVD MNEEHQLRNV FWVDGKAMGE RAPKVILTDQ NTSIKAVIGA  240
VLPGTRHYFS LWYILEKIPK ELEFLSMWHE NFMEKFKKYV FKSWTKEEFE KRWQKLLDRF  300
NLREVEWMQH LYDDRAYWVP AFARDVSFAG LCTSSRMESL NSSFDKYVQI ETSLKEFIVR  360
YRDILEERYE EEAKANFDAW HESPELKSPS PFEKQMSLVY TYEIFKKFQM EVLGAAACHL  420
KKETEDETLA TYNVKDFEDG QNYVVECSHS NSDIYCSCRS FEYKGFLCRH AIIVLQMSGV  480
FSIPSKYILQ RWTNTAMSRN PINEKLDEVQ CKVRRFNDLC RRAIILGEEG SLSQESYDIA  540
LSAINEALKQ CATVSRSSSA ESDVRSDTSA MLVFGIEDNQ CNNNLAVDNA PDLKVINAKK  600
IPNLAGSSNE PAVNESNKNR KVSQPFATNA GSRDDFNQME LSDMRPIQLN GISPTQLHNM  660
VPTLLQFHSM SSSHLHEDRL PR*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681875	0.0	LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBank	LN713262	0.0	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008439434.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 4 isoform X1
Swissprot	Q6NQJ7	0.0	FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBL	A0A1S3AYS5	0.0	A0A1S3AYS5_CUCME; protein FAR1-RELATED SEQUENCE 4 isoform X1
STRING	XP_008439433.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.1	0.0	FAR1-related sequence 4

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]