PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C006934P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB_related
Protein Properties Length: 286aa    MW: 32100.4 Da    PI: 9.8533
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C006934P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.71.1e-1256100147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT+ E++++++a++++  + Wk+I + +g  +t  q++s+ qky
   MELO3C006934P1  56 RESWTEPEHDKFLEAIQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 100
                      789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.73E-1650106IPR009057Homeodomain-like
PROSITE profilePS5129413.28751105IPR017930Myb domain
TIGRFAMsTIGR015572.6E-1854103IPR006447Myb domain, plants
SMARTSM007175.8E-1055103IPR001005SANT/Myb domain
PfamPF002492.2E-1056100IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-65696IPR009057Homeodomain-like
CDDcd001674.94E-858101No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MALRQLQTAI FSNLPLRLSP DVGSLRMALP FESVTTSSRD DLSKRARKPY TITKCRESWT  60
EPEHDKFLEA IQLFDRDWKK IEAFVGSKTV IQIRSHAQKY FLKVEKSGTG EHLPPPRPKR  120
KAAHPYPQKA SKNVSGVALV TVPFQSSSVE PKYNIKPDSS SAPASFISAT AMSSRADNSI  180
QTVNFSQGQV IENNCSSSTD RTTRTRFPTK SSIEEHNNLQ LRVLPDFGQV YNFIGSVFDP  240
KASNHLKRLE QMDQIDVETV LLLMRNLAIN LTSSDFEDHV SLYPQ*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818481e-118LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132601e-118LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008439280.10.0PREDICTED: protein REVEILLE 6-like isoform X5
SwissprotQ8H0W31e-100RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A1S3AZ320.0A0A1S3AZ32_CUCME; protein REVEILLE 6-like isoform X5
STRINGXP_008439276.10.0(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.12e-86MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]