PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C006891P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family HSF
Protein Properties Length: 298aa    MW: 33601.9 Da    PI: 5.9825
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C006891P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.63.2e-36291192101
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++de+++++isw+++g++f+v+++  fak+ LpkyFkh+nf+SF+RQLn+YgF+kv +++         weF+++ F+kgkk+ll++
  MELO3C006891P1  29 FLTKTYQLVDDESIDHVISWNDDGSTFIVWNTMAFAKDFLPKYFKHNNFTSFLRQLNTYGFRKVVSDR---------WEFANECFRKGKKQLLCE 114
                     9****************************************************************999.........****************** PP

                     XXXXX CS
    HSF_DNA-bind  97 ikrkk 101
                     i+r+k
  MELO3C006891P1 115 IQRRK 119
                     ***97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.4E-3721113IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.1E-5525118IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.36E-3326118IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.6E-192952IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.3E-3129118IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.6E-196779IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406892IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.6E-198092IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MLVAPLMEEP TTKSTTTGND SYRSVPTPFL TKTYQLVDDE SIDHVISWND DGSTFIVWNT  60
MAFAKDFLPK YFKHNNFTSF LRQLNTYGFR KVVSDRWEFA NECFRKGKKQ LLCEIQRRKL  120
AGPVPSSASN AAVVTTVGAS AIPSVQLLPL TGNSSGEEQV ISSDETPTRA LAELIDENDR  180
LRREKVQLTE QLVEVKSLCN NIFSLMSSFV ESQFKSSFKV RESVLASAKS LDLFPVKRPA  240
GEEERAEVKE EETNQIGVKR AREYREGATE TAENDTTLRL QPPDRWVVKS ERINCQK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-242411825129Heat shock factor protein 1
5d5v_B1e-242411825129Heat shock factor protein 1
5d5v_D1e-242411825129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818480.0LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008439190.10.0PREDICTED: heat stress transcription factor B-2b-like
SwissprotQ6Z9C82e-67HFB2B_ORYSJ; Heat stress transcription factor B-2b
TrEMBLA0A1S3AY570.0A0A1S3AY57_CUCME; heat stress transcription factor B-2b-like
STRINGXP_008439190.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20373482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.12e-68heat shock transcription factor B2A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Xiang J, et al.
    Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice.
    Plant Cell Rep., 2013. 32(11): p. 1795-806
    [PMID:23949687]