PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C006887P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

HD-ZIP

Protein Properties

Length: 752aa MW: 82947.2 Da PI: 5.7435

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C006887P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.7	3e-21	55	110	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r+k +++t++q++eLe +F+++++p+ ++r eL+++lgL+++qVk+WFqNrR+++k MELO3C006887P1 55 RKKYHRHTPHQIQELEIFFKECPHPDDKQRNELSRRLGLETKQVKFWFQNRRTQMK 110 7999*************************************************999 PP
2	START	173.8	1.1e-54	263	483	2	205
HHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS START 2 laeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 la++a++elvk+a+ + p+W + +n de+ ++f++s + ++ea r++++v+ ++ lve+l+d + +W e+++ +a+t+ MELO3C006887P1 263 LALAAMNELVKMAQMDGPLWIRTQddsskATLNLDEYSRTFPSSAGikhttWTTEATRDTTMVIINSLALVETLMDAN-RWAEMFPcliaRATTI 356 6899****************99998888999****999889999************************.************ PP EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS START 83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170 +vissg galqlm ael +lsplvp R f+R+++q+ +g w++vdvS+ + ++ + s+ +++lpSg+++++++ng skvtwveh+ MELO3C006887P1 357 DVISSGmggtrnGALQLMHAELRVLSPLVPvRTLKFLRFCKQHADGLWAVVDVSIGEGSNSN---SFFGCRRLPSGCVVQDMPNGFSKVTWVEHT 448 ******************************************************9965...8************************* PP E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 171 dlkgrlphwllrslvksglaegaktwvatlqrqce 205 ++++ ++h+l+r+l++sg +g ++w+atlqrqc MELO3C006887P1 449 EYDETVIHQLYRQLISSGSGFGSQRWLATLQRQCD 483 *******************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.92E-20	39	112	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.3E-22	41	112	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.491	52	112	IPR001356	Homeobox domain
SMART	SM00389	4.3E-20	54	116	IPR001356	Homeobox domain
CDD	cd00086	2.66E-20	55	112	No hit	No description
Pfam	PF00046	7.5E-19	55	110	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	87	110	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	39.55	253	487	IPR002913	START domain
SuperFamily	SSF55961	2.47E-29	254	484	No hit	No description
SMART	SM00234	5.1E-34	262	484	IPR002913	START domain
CDD	cd08875	1.05E-110	262	482	No hit	No description
Pfam	PF01852	6.3E-47	263	483	IPR002913	START domain
SuperFamily	SSF55961	3.43E-17	512	745	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 752 aa Download sequence Send to blast
MDGYGEVCLL GDGFDPIGIV RIREDEYDSR SGSDNIDGAV SGDDHDANDE QPPKRKKYHR 60 HTPHQIQELE IFFKECPHPD DKQRNELSRR LGLETKQVKF WFQNRRTQMK TQIERHENAI 120 LKQENDKLRA ENSVMKDAIS NPTCSTCGGP SIPVQLSFEE HQLRIENARL REELHRLYAV 180 TNKFLGWPVV PFVNHGSSPS SDSCLELSVG RNGPGNLSTV SDSMGLNLGN GLFSAGPVMP 240 ISKPDIGMLS NDIPLERTIY VDLALAAMNE LVKMAQMDGP LWIRTQDDSS KATLNLDEYS 300 RTFPSSAGIK HTTWTTEATR DTTMVIINSL ALVETLMDAN RWAEMFPCLI ARATTIDVIS 360 SGMGGTRNGA LQLMHAELRV LSPLVPVRTL KFLRFCKQHA DGLWAVVDVS IGEGSNSNSF 420 FGCRRLPSGC VVQDMPNGFS KVTWVEHTEY DETVIHQLYR QLISSGSGFG SQRWLATLQR 480 QCDCLAILMS STIPTEDPAG ISPSGRRSML KLSQRMVDNF CSGVCSSTLH KWDKLVVGNI 540 SEDVKVMARK SINDPGEPPG IVLSAATSVW MPVTQQRLFE FLQDECLRSE WDILSNSRPM 600 LEMLRISKGQ GPDNRVSLLC ANPMNANENT MFILQETWTD VSGSLVVFAP VDTSSVNLVM 660 RGGDSAYVSL LPSGFAILPI DQSNYACTND QDASVKSSLN SGHGGACLLT VAFQILVNSL 720 PTAKLTVESV ETVNHLISCT IQKIKTALQV S*

Sequence ? help Back to Top

Protein Sequence Length: 752 aa Download sequence Send to blast

MDGYGEVCLL GDGFDPIGIV RIREDEYDSR SGSDNIDGAV SGDDHDANDE QPPKRKKYHR  60
HTPHQIQELE IFFKECPHPD DKQRNELSRR LGLETKQVKF WFQNRRTQMK TQIERHENAI  120
LKQENDKLRA ENSVMKDAIS NPTCSTCGGP SIPVQLSFEE HQLRIENARL REELHRLYAV  180
TNKFLGWPVV PFVNHGSSPS SDSCLELSVG RNGPGNLSTV SDSMGLNLGN GLFSAGPVMP  240
ISKPDIGMLS NDIPLERTIY VDLALAAMNE LVKMAQMDGP LWIRTQDDSS KATLNLDEYS  300
RTFPSSAGIK HTTWTTEATR DTTMVIINSL ALVETLMDAN RWAEMFPCLI ARATTIDVIS  360
SGMGGTRNGA LQLMHAELRV LSPLVPVRTL KFLRFCKQHA DGLWAVVDVS IGEGSNSNSF  420
FGCRRLPSGC VVQDMPNGFS KVTWVEHTEY DETVIHQLYR QLISSGSGFG SQRWLATLQR  480
QCDCLAILMS STIPTEDPAG ISPSGRRSML KLSQRMVDNF CSGVCSSTLH KWDKLVVGNI  540
SEDVKVMARK SINDPGEPPG IVLSAATSVW MPVTQQRLFE FLQDECLRSE WDILSNSRPM  600
LEMLRISKGQ GPDNRVSLLC ANPMNANENT MFILQETWTD VSGSLVVFAP VDTSSVNLVM  660
RGGDSAYVSL LPSGFAILPI DQSNYACTND QDASVKSSLN SGHGGACLLT VAFQILVNSL  720
PTAKLTVESV ETVNHLISCT IQKIKTALQV S*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269\|PubMed:10402424}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681848	0.0	LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBank	LN713260	0.0	LN713260.1 Cucumis melo genomic chromosome, chr_6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008439184.1	0.0	PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1
Swissprot	Q0WV12	0.0	ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBL	A0A1S3AY76	0.0	A0A1S3AY76_CUCME; homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1
STRING	XP_008439184.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1192	34	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.1	0.0	HD-ZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]