PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C006873P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ARR-B
Protein Properties Length: 201aa    MW: 22844 Da    PI: 10.7573
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C006873P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like70.92e-22145194151
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                     kp++ Wt+ LH+rF++a++ + G +kA+Pk+ile+m+v+gLt+e+v+SHLQ
  MELO3C006873P1 145 KPKVIWTNSLHNRFLQAIRLI-GLHKAVPKKILEFMNVPGLTRENVASHLQ 194
                     799***************999.***************************** PP

2Response_reg50.21.5e-1727834109
                     HHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
    Response_reg  34 ealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                     eal++l++++  +Dl+++D+ mp+m+Gl+l k+  +e  klp+i+++a ++++ +l+ l+ G+  + +Kp++ e++ +
  MELO3C006873P1   2 EALDTLRARKgfFDLVVTDLHMPQMNGLQLQKKVMQEF-KLPVIMMSADEKPSVILKSLEEGVAFYMVKPISLEDVKQ 78 
                     799999998899**********************9988.9********************************999765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011027.783184IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.3E-14278IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.94E-17284No hitNo description
SuperFamilySSF521721.34E-20295IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.6E-232101No hitNo description
SuperFamilySSF466897.88E-16142195IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.1E-21144196IPR009057Homeodomain-like
TIGRFAMsTIGR015573.4E-23145195IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MEALDTLRAR KGFFDLVVTD LHMPQMNGLQ LQKKVMQEFK LPVIMMSADE KPSVILKSLE  60
EGVAFYMVKP ISLEDVKQVW QYVITTKNVI PNQTTTIIQR QLSIDKSSNS STPCSEKEII  120
KSKSRSSKFK NNKAKQKSIN VPIRKPKVIW TNSLHNRFLQ AIRLIGLHKA VPKKILEFMN  180
VPGLTRENVA SHLQVKYVPS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A7e-18144194454ARR10-B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818480.0LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008439164.11e-137PREDICTED: two-component response regulator ARR14-like
TrEMBLA0A1S3AYS81e-135A0A1S3AYS8_CUCME; two-component response regulator ARR14-like
STRINGXP_008439164.11e-136(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101422534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.14e-45response regulator 2