PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C006873P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ARR-B | ||||||||
Protein Properties | Length: 201aa MW: 22844 Da PI: 10.7573 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 70.9 | 2e-22 | 145 | 194 | 1 | 51 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 kp++ Wt+ LH+rF++a++ + G +kA+Pk+ile+m+v+gLt+e+v+SHLQ MELO3C006873P1 145 KPKVIWTNSLHNRFLQAIRLI-GLHKAVPKKILEFMNVPGLTRENVASHLQ 194 799***************999.***************************** PP | |||||||
2 | Response_reg | 50.2 | 1.5e-17 | 2 | 78 | 34 | 109 |
HHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS Response_reg 34 ealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109 eal++l++++ +Dl+++D+ mp+m+Gl+l k+ +e klp+i+++a ++++ +l+ l+ G+ + +Kp++ e++ + MELO3C006873P1 2 EALDTLRARKgfFDLVVTDLHMPQMNGLQLQKKVMQEF-KLPVIMMSADEKPSVILKSLEEGVAFYMVKPISLEDVKQ 78 799999998899**********************9988.9********************************999765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50110 | 27.783 | 1 | 84 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 5.3E-14 | 2 | 78 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 1.94E-17 | 2 | 84 | No hit | No description |
SuperFamily | SSF52172 | 1.34E-20 | 2 | 95 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 2.6E-23 | 2 | 101 | No hit | No description |
SuperFamily | SSF46689 | 7.88E-16 | 142 | 195 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.1E-21 | 144 | 196 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.4E-23 | 145 | 195 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MEALDTLRAR KGFFDLVVTD LHMPQMNGLQ LQKKVMQEFK LPVIMMSADE KPSVILKSLE 60 EGVAFYMVKP ISLEDVKQVW QYVITTKNVI PNQTTTIIQR QLSIDKSSNS STPCSEKEII 120 KSKSRSSKFK NNKAKQKSIN VPIRKPKVIW TNSLHNRFLQ AIRLIGLHKA VPKKILEFMN 180 VPGLTRENVA SHLQVKYVPS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 7e-18 | 144 | 194 | 4 | 54 | ARR10-B |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681848 | 0.0 | LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006. | |||
GenBank | LN713260 | 0.0 | LN713260.1 Cucumis melo genomic chromosome, chr_6. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008439164.1 | 1e-137 | PREDICTED: two-component response regulator ARR14-like | ||||
TrEMBL | A0A1S3AYS8 | 1e-135 | A0A1S3AYS8_CUCME; two-component response regulator ARR14-like | ||||
STRING | XP_008439164.1 | 1e-136 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10142 | 25 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16110.1 | 4e-45 | response regulator 2 |