PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C006856P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

Trihelix

Protein Properties

Length: 905aa MW: 101837 Da PI: 7.0088

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C006856P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	27	1.2e-08	214	265	24	75
trihelix 24 gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtses 75 gk ++ + +ev+++++++g++r +k+ kw+n+ ++++k+ e+e++++ e+ MELO3C006856P1 214 GKTRADKDREVAEYLQKHGVNRDAKTAGTKWDNMLGEFRKVYEWERGGEREQ 265 567888889*************************************996555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF56112	4.16E-14	739	885	IPR011009	Protein kinase-like domain
Gene3D	G3DSA:1.10.510.10	5.0E-6	741	849	No hit	No description
CDD	cd00180	4.72E-11	746	886	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 905 aa Download sequence Send to blast
MGEKGETPQQ QDHYDSSSPK DPLDDSLETR SHGGSHHHHG HHHHLHRRHQ HQHHDSSLIV 60 ATPFISTPLY LSTTATPTTT AFEAVNPKRT RYTAGQWKLL PSPTTSQPAI PVVGSDSSAS 120 PSQRRPGATS NVGPASSSDT TSSPSHSPLP ARSKGEGESQ NQAQYRKGKY VSPVWKPNEM 180 LWLARAWRVQ YQGGGSSNEI VGGTVVGQGG RGIGKTRADK DREVAEYLQK HGVNRDAKTA 240 GTKWDNMLGE FRKVYEWERG GEREQLVGKS YFRLSPYERK LHRLPASFDE QVFEELSQFM 300 GSKMRNKPTP ILPLTTSLPP PPPFRDHHNQ LPLSSRAKEV FGVDYGSVDA SCHRRIGKVR 360 MVWEESVSLW GEDQGVGGDQ EHRLGGRIRV EGDIFSLPEF VLNVANLRWF YSANTSWDYQ 420 DPTEYYVGCL RIPPTSLPSL SELSWHIQDP PSEELRFPIR KDAYAYLPQG KEVMFTTTTE 480 MLDCKSFIYE IICPIIRTNP CIATPSSRDS FISLWDDCIN RLVSEFCCME MQLIRKPSNP 540 PSSSSTTTDN LLDEWPNITG FIKKKFCLWR GEETDQIKDN GLNNNPSSSL VDKLLWTYLD 600 IPYVLGYYAI GYLVTFCALS RGQDNRIIRT DLYSLDLSSP SERLKALVPC YRIGGILTLL 660 AEQCNKLGVS SDFERIDVGN GIVVEMTPNL VTKFFSCRRK WTAVKEIYDF LDQRIPHSEY 720 IIGSIEKDLA LVFKPRVCKL RPTSYEQLIE ALKNVTKALV ALHDLCFMHR DICWEKVMKK 780 GRDHNDEDEN EEDEEMKRVK GEWILCGFEE AVGAPQIYPY TAASGRHAPE MGRGLHGVKV 840 DMWGVGYLIQ TCGLIGIPKM LMELQNRCMD QNPEHRPTAA DCYHHLLQLQ SSLSGAAGGS 900 GGLM*

Sequence ? help Back to Top

Protein Sequence Length: 905 aa Download sequence Send to blast

MGEKGETPQQ QDHYDSSSPK DPLDDSLETR SHGGSHHHHG HHHHLHRRHQ HQHHDSSLIV  60
ATPFISTPLY LSTTATPTTT AFEAVNPKRT RYTAGQWKLL PSPTTSQPAI PVVGSDSSAS  120
PSQRRPGATS NVGPASSSDT TSSPSHSPLP ARSKGEGESQ NQAQYRKGKY VSPVWKPNEM  180
LWLARAWRVQ YQGGGSSNEI VGGTVVGQGG RGIGKTRADK DREVAEYLQK HGVNRDAKTA  240
GTKWDNMLGE FRKVYEWERG GEREQLVGKS YFRLSPYERK LHRLPASFDE QVFEELSQFM  300
GSKMRNKPTP ILPLTTSLPP PPPFRDHHNQ LPLSSRAKEV FGVDYGSVDA SCHRRIGKVR  360
MVWEESVSLW GEDQGVGGDQ EHRLGGRIRV EGDIFSLPEF VLNVANLRWF YSANTSWDYQ  420
DPTEYYVGCL RIPPTSLPSL SELSWHIQDP PSEELRFPIR KDAYAYLPQG KEVMFTTTTE  480
MLDCKSFIYE IICPIIRTNP CIATPSSRDS FISLWDDCIN RLVSEFCCME MQLIRKPSNP  540
PSSSSTTTDN LLDEWPNITG FIKKKFCLWR GEETDQIKDN GLNNNPSSSL VDKLLWTYLD  600
IPYVLGYYAI GYLVTFCALS RGQDNRIIRT DLYSLDLSSP SERLKALVPC YRIGGILTLL  660
AEQCNKLGVS SDFERIDVGN GIVVEMTPNL VTKFFSCRRK WTAVKEIYDF LDQRIPHSEY  720
IIGSIEKDLA LVFKPRVCKL RPTSYEQLIE ALKNVTKALV ALHDLCFMHR DICWEKVMKK  780
GRDHNDEDEN EEDEEMKRVK GEWILCGFEE AVGAPQIYPY TAASGRHAPE MGRGLHGVKV  840
DMWGVGYLIQ TCGLIGIPKM LMELQNRCMD QNPEHRPTAA DCYHHLLQLQ SSLSGAAGGS  900
GGLM*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681848	0.0	LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBank	LN713260	0.0	LN713260.1 Cucumis melo genomic chromosome, chr_6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016898960.1	0.0	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103484212
TrEMBL	A0A1S4DTD2	0.0	A0A1S4DTD2_CUCME; LOW QUALITY PROTEIN: uncharacterized protein LOC103484212
STRING	XP_008439395.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11857	28	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	9e-07	Trihelix family protein