PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C006794P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bZIP

Protein Properties

Length: 411aa MW: 45011.8 Da PI: 6.5168

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C006794P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.2	4.6e-10	223	275	5	57
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l l+ + MELO3C006794P1 223 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSTQLTLLQRDAN 275 9*****************************************99999987765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.1E-15	219	283	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.737	221	284	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.27E-10	223	273	No hit	No description
Pfam	PF00170	8.9E-9	223	271	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.2E-10	223	274	No hit	No description
CDD	cd14703	1.04E-23	224	273	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence Send to blast
MDKEKPQSHG GGFLHQSSRY SGFSSAESSF NGKSEATSSS MSFPPLAPST NSDWGQSGRG 60 LSTDSTRFSH DISRMPENPR RNVGHRRAHS EILTLPDDIC FDSDLGIIGG ADGPSLSDDT 120 EEDLLSMYLD MDKFNSSTAT SANQVGDSSS PLVEAAAATS TDDIAVGLKE RPRVRHQHSQ 180 SMDGLTNIKP EMLVSGSDEA SAADTKKAMS AAKLAELALI DPKRAKRIWA NRQSAARSKE 240 RKMRYIAELE RKVQTLQTEA TSLSTQLTLL QRDANGITAE NSELKLRLQT MEQQVHLQDA 300 LNEALKEEIQ HLKVLTGQAM PNGRSITNFA SFGAGQQFYA PNNQAVHTLL TAQQFQQLQI 360 QSQQQQQQHF QYQQLHQLQQ QQAADTRMKG SISPQSSKDS AFDTKPPTTC *

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence Send to blast

MDKEKPQSHG GGFLHQSSRY SGFSSAESSF NGKSEATSSS MSFPPLAPST NSDWGQSGRG  60
LSTDSTRFSH DISRMPENPR RNVGHRRAHS EILTLPDDIC FDSDLGIIGG ADGPSLSDDT  120
EEDLLSMYLD MDKFNSSTAT SANQVGDSSS PLVEAAAATS TDDIAVGLKE RPRVRHQHSQ  180
SMDGLTNIKP EMLVSGSDEA SAADTKKAMS AAKLAELALI DPKRAKRIWA NRQSAARSKE  240
RKMRYIAELE RKVQTLQTEA TSLSTQLTLL QRDANGITAE NSELKLRLQT MEQQVHLQDA  300
LNEALKEEIQ HLKVLTGQAM PNGRSITNFA SFGAGQQFYA PNNQAVHTLL TAQQFQQLQI  360
QSQQQQQQHF QYQQLHQLQQ QQAADTRMKG SISPQSSKDS AFDTKPPTTC *

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor with an activatory role.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681848	0.0	LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBank	LN713260	0.0	LN713260.1 Cucumis melo genomic chromosome, chr_6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008439065.1	0.0	PREDICTED: probable transcription factor PosF21
Refseq	XP_008439066.1	0.0	PREDICTED: probable transcription factor PosF21
Refseq	XP_008439067.1	0.0	PREDICTED: probable transcription factor PosF21
Refseq	XP_008439068.1	0.0	PREDICTED: probable transcription factor PosF21
Refseq	XP_008439069.1	0.0	PREDICTED: probable transcription factor PosF21
Swissprot	Q04088	1e-144	POF21_ARATH; Probable transcription factor PosF21
TrEMBL	A0A1S3AYI7	0.0	A0A1S3AYI7_CUCME; probable transcription factor PosF21
STRING	XP_008439065.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5517	32	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	1e-146	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]