PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C006784P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bZIP

Protein Properties

Length: 417aa MW: 45132.9 Da PI: 6.5142

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C006784P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	29.8	1.3e-09	231	288	5	62
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l l+ l +e MELO3C006784P1 231 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLSAE 288 9*******************************************99998877666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	8.6E-15	227	291	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.898	229	292	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.05E-10	231	282	No hit	No description
Pfam	PF00170	1.7E-8	231	285	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.3E-10	231	285	No hit	No description
CDD	cd14703	2.63E-25	232	281	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence Send to blast
MEKDKPQSFS GGFPPPSSRY SGLSPTGSIF NGKSEATSSS MLLPPMPSGG LSDSGQFGHG 60 MPTDSNRFSH DISRMPDNPP RNIGHRRAHS EILTLPDDIC FDNDLGVIGS ADGPSFSDDT 120 EEDLLSMYLD MDKFNSSTAT STIQVGESSS AVGEARSTST STIGAATSKD DAAVGLKERP 180 RVRHQHSQSM DGLSTIKPEM LVSGSEEASA ADSKKAMSAT KLAELALIDP KRAKRIWANR 240 QSAARSKERK MRYIAELERK VQTLQTEATS LSAQLTLLQR DTNGLSAENN ELKLRLQTME 300 QQVHLQDALN EALKEEIQHL KVLTGQAIPN GGSVTNFASF GAAAQPFYPS NQAMHTLLTA 360 QQFQQLQIHS QQQQQHFQYH QLHQLHQQST GDNKSKGSAS SPNPKDNTSD TSSTTC*

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence Send to blast

MEKDKPQSFS GGFPPPSSRY SGLSPTGSIF NGKSEATSSS MLLPPMPSGG LSDSGQFGHG  60
MPTDSNRFSH DISRMPDNPP RNIGHRRAHS EILTLPDDIC FDNDLGVIGS ADGPSFSDDT  120
EEDLLSMYLD MDKFNSSTAT STIQVGESSS AVGEARSTST STIGAATSKD DAAVGLKERP  180
RVRHQHSQSM DGLSTIKPEM LVSGSEEASA ADSKKAMSAT KLAELALIDP KRAKRIWANR  240
QSAARSKERK MRYIAELERK VQTLQTEATS LSAQLTLLQR DTNGLSAENN ELKLRLQTME  300
QQVHLQDALN EALKEEIQHL KVLTGQAIPN GGSVTNFASF GAAAQPFYPS NQAMHTLLTA  360
QQFQQLQIHS QQQQQHFQYH QLHQLHQQST GDNKSKGSAS SPNPKDNTSD TSSTTC*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor with an activatory role.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00126	DAP	Transfer from AT1G06070	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681848	0.0	LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBank	LN713260	0.0	LN713260.1 Cucumis melo genomic chromosome, chr_6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008439053.1	0.0	PREDICTED: probable transcription factor PosF21
Refseq	XP_008439054.1	0.0	PREDICTED: probable transcription factor PosF21
Swissprot	Q04088	1e-160	POF21_ARATH; Probable transcription factor PosF21
TrEMBL	A0A1S3AYF8	0.0	A0A1S3AYF8_CUCME; probable transcription factor PosF21
STRING	XP_008439053.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5517	32	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	1e-146	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]