PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C006725P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

WRKY

Protein Properties

Length: 175aa MW: 19333.5 Da PI: 8.2472

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C006725P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	104.9	4.3e-33	9	67	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s++prsYYrCt+agC vkk+vers+ d ++v++tYeg+H+h+ MELO3C006725P1 9 LDDGYRWRKYGQKAVKNSPYPRSYYRCTTAGCGVKKRVERSSGDHTIVVTTYEGQHTHQ 67 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.1E-32	2	69	IPR003657	WRKY domain
SuperFamily	SSF118290	2.35E-29	3	69	IPR003657	WRKY domain
PROSITE profile	PS50811	32.305	4	69	IPR003657	WRKY domain
SMART	SM00774	2.6E-38	9	68	IPR003657	WRKY domain
Pfam	PF03106	3.4E-26	10	67	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MTKSDIDHLD DGYRWRKYGQ KAVKNSPYPR SYYRCTTAGC GVKKRVERSS GDHTIVVTTY 60 EGQHTHQSPI MPRGSLRVLP ESTNNSLTVD HDTTTTGLLF QHNTSSQPFM YSSPPSPFLT 120 INSSSVAATS TPHPPPPISF QPPSLPQASV RDHGLLQDLV PLQMRNEPKD EQDG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	4e-29	2	69	10	77	Probable WRKY transcription factor 4
2lex_A	4e-29	2	69	10	77	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681848	0.0	LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBank	LN713260	0.0	LN713260.1 Cucumis melo genomic chromosome, chr_6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016898926.1	1e-127	PREDICTED: probable WRKY transcription factor 48
Swissprot	Q9FGZ4	4e-48	WRK48_ARATH; Probable WRKY transcription factor 48
TrEMBL	A0A1S4DSG1	1e-126	A0A1S4DSG1_CUCME; probable WRKY transcription factor 48
STRING	XP_008439387.1	1e-127	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1002	34	114

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49520.1	3e-46	WRKY DNA-binding protein 48

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]