PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C006696P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GATA
Protein Properties Length: 152aa    MW: 16364.8 Da    PI: 10.2447
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C006696P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.68.1e-194175135
            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                    C+ Cgt+kTplWR gp g+k+LCnaCG++ rkk++
  MELO3C006696P1 41 CADCGTSKTPLWRGGPAGPKSLCNACGIRSRKKRR 75
                    ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.19E-123474No hitNo description
PROSITE profilePS5011412.3473571IPR000679Zinc finger, GATA-type
SMARTSM004015.3E-133599IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.4E-153975IPR013088Zinc finger, NHR/GATA-type
CDDcd002029.88E-134075No hitNo description
PROSITE patternPS0034404166IPR000679Zinc finger, GATA-type
PfamPF003209.1E-174175IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MVSDQCLLMV QGSESEDMSG KNSSGVSSEE SQVNEQNKKT CADCGTSKTP LWRGGPAGPK  60
SLCNACGIRS RKKRRAILGL SKGVVEDKKN KKSSNISSNS KLRDSLKQRL LALGREVLMQ  120
RSTVERQRKK LGEEEQAAVL LMALSCGSVY A*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00335DAPTransfer from AT3G06740Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818481e-154LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132601e-154LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004134235.16e-95PREDICTED: GATA transcription factor 16
RefseqXP_008438922.15e-95PREDICTED: GATA transcription factor 16-like
SwissprotQ8LG109e-48GAT15_ARATH; GATA transcription factor 15
SwissprotQ9FJ106e-48GAT16_ARATH; GATA transcription factor 16
TrEMBLA0A0A0L9421e-93A0A0A0L942_CUCSA; Uncharacterized protein
TrEMBLA0A1S3AXI21e-93A0A1S3AXI2_CUCME; GATA transcription factor 16-like
STRINGXP_004134234.11e-102(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15693298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.13e-45GATA transcription factor 15
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  3. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]