PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C006501P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family HSF
Protein Properties Length: 363aa    MW: 42618.6 Da    PI: 5.8316
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C006501P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.91e-35391312103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+yei+ed  +++++sws+ +nsfvv+d+++f+ ++LpkyFkhsnf+SFvRQLn+YgF+kv+ ++         weF+h+ F +g+k+ll+ 
  MELO3C006501P1  39 FLTKTYEIIEDIGTNHIVSWSRGNNSFVVWDPQSFSLTLLPKYFKHSNFSSFVRQLNTYGFRKVDPDK---------WEFAHEGFLRGQKHLLKL 124
                     9****************************************************************999.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i+r+k +
  MELO3C006501P1 125 IRRRKAS 131
                     ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.8E-3832122IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.7E-5935128IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.84E-3435128IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.1E-3039128IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-183962IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-187789IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434078102IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-1890102IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MNRPGRRVKE EFTASSSSRT TTASPQPLEG LHEAGPPPFL TKTYEIIEDI GTNHIVSWSR  60
GNNSFVVWDP QSFSLTLLPK YFKHSNFSSF VRQLNTYGFR KVDPDKWEFA HEGFLRGQKH  120
LLKLIRRRKA SQPNASHQAP DPCVEVGRFG LDGEVDRLQR DKQVLMAEVV KLRQQQQNTK  180
TCLQTMERRL KKTETRQQLM MNFLARAIQN PDFIQQLIHQ KDKHKELEEA INRKRRRHID  240
QGRPDFEDEE EKEDHDHRLP PFVNEDIEMD VDLLPVANEE HQMTYHVPKK EIMDENYERN  300
VDGEDLNEGF WENLLNEVNE EDHYGFGIHG FEEQKDYKDE DLHGINNELV DHFTLFTSTD  360
LK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-233413112123Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1232236RKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818480.0LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008438616.10.0PREDICTED: heat stress transcription factor A-6b
SwissprotQ9LUH81e-117HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A1S3AWX80.0A0A1S3AWX8_CUCME; heat stress transcription factor A-6b
STRINGXP_008438616.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-115heat shock transcription factor A6B