PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C006333P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ERF | ||||||||
Protein Properties | Length: 165aa MW: 18620.6 Da PI: 10.714 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.6 | 3.7e-19 | 94 | 142 | 1 | 53 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkl 53 s+y+GVr++k +grW+AeIrd + + r+r++lg++ taeeA +a++ r+++ MELO3C006333P1 94 SRYRGVRQRK-WGRWAAEIRDpF-K---RARVWLGTYNTAEEASRAYESKRLEF 142 79*******9.**********55.3...5********************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038123 | 1.5E-32 | 1 | 156 | IPR017392 | AP2/ERF transcription factor ERF/PTI6 |
SuperFamily | SSF54171 | 1.18E-17 | 94 | 146 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.6E-13 | 94 | 142 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.57E-23 | 94 | 148 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.3E-22 | 95 | 147 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.0E-16 | 95 | 149 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.85 | 95 | 157 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.9E-11 | 96 | 107 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.9E-11 | 118 | 134 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
MSRKIRVICN DPDGTDSSSS ENERDESNSS KSKRIVREIH FPLLPSSNST SNSSIHDEET 60 SHTSSHHTNN GGKPQQLTNI RVLTKTLTPE RTTSRYRGVR QRKWGRWAAE IRDPFKRARV 120 WLGTYNTAEE ASRAYESKRL EFQSAMAAAP KSPTRFKGSH VLGY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-13 | 96 | 136 | 6 | 47 | ATERF1 |
3gcc_A | 6e-13 | 96 | 136 | 6 | 47 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681848 | 0.0 | LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006. | |||
GenBank | LN713260 | 0.0 | LN713260.1 Cucumis melo genomic chromosome, chr_6. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008439360.1 | 1e-119 | PREDICTED: ethylene-responsive transcription factor ERF118-like | ||||
TrEMBL | A0A1S3AYM8 | 1e-118 | A0A1S3AYM8_CUCME; ethylene-responsive transcription factor ERF118-like | ||||
STRING | XP_008439360.1 | 1e-118 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2690 | 34 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68550.2 | 1e-22 | ERF family protein |