PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C006313P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

G2-like

Protein Properties

Length: 316aa MW: 34090.7 Da PI: 6.4039

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C006313P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	108.9	2.6e-34	50	104	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQkYRl MELO3C006313P1 50 KPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRL 104 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.944	47	107	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.1E-33	47	105	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.15E-17	50	107	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.1E-24	50	105	IPR006447	Myb domain, plants
Pfam	PF00249	9.8E-9	52	103	IPR001005	SANT/Myb domain
Pfam	PF14379	1.0E-26	147	193	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010628	Biological Process	positive regulation of gene expression
GO:0016036	Biological Process	cellular response to phosphate starvation
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MLSGFSQEPA GMYSAIPALP MDGGGGKFQG SLDGTNLPGD ACLVLTSDPK PRLRWTAELH 60 ERFVDAVTQL GGPDKATPKT IMRTMGVKGL TLYHLKSHLQ KYRLGKQSFK ESTENSKDAS 120 CIAESQETSS SSSPSSRIMA QDLNDGFQVT EALRVQMEVQ RRLHEQLEVQ RHLQLRIEAQ 180 GKYLQSILER ACQALSDQAA ASAGLEAARE ELSELAIKVS NDSKEMAPLE TQKVLPFSEL 240 AAALENRKAP TVMPRIGDCS MDSCLTSAGS PVSPIGVGST ATAMKRPRPV FSHGDSMALE 300 GNARHDVEWM MSNIG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-19	50	106	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-19	50	106	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	3e-19	50	106	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-19	50	106	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-19	50	106	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-19	50	106	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-19	50	106	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-19	50	106	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-19	50	106	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-19	50	106	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-19	50	106	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-19	50	106	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	284	288	KRPRP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00378	DAP	Transfer from AT3G24120	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681848	0.0	LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBank	LN713260	0.0	LN713260.1 Cucumis melo genomic chromosome, chr_6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008438354.1	0.0	PREDICTED: myb family transcription factor APL isoform X1
Swissprot	Q94A57	1e-130	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	A0A1S3AWU1	0.0	A0A1S3AWU1_CUCME; myb family transcription factor APL isoform X1
STRING	XP_008438354.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13367	21	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	1e-116	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]