PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C006288P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | HSF | ||||||||
Protein Properties | Length: 468aa MW: 52461.1 Da PI: 6.9277 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 108.3 | 6e-34 | 18 | 108 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl k+y++++d++++e++sw+++++sfvv+++ efa+ +Lp++Fkhsnf+SF+RQLn+YgF+k+++e+ weF+++ F k++k+ll++ MELO3C006288P1 18 FLLKTYDMVDDSSTDEIVSWTSSKKSFVVWNPPEFARLLLPTFFKHSNFSSFIRQLNTYGFRKIDSEK---------WEFANEDFIKDQKHLLKN 103 9****************************************************************998.........****************** PP XXXXX CS HSF_DNA-bind 97 ikrkk 101 i+r+k MELO3C006288P1 104 IHRRK 108 ***98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.2E-36 | 14 | 107 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 3.7E-58 | 14 | 107 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 1.43E-34 | 14 | 107 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.6E-29 | 18 | 107 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 8.5E-18 | 18 | 41 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 8.5E-18 | 56 | 68 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 57 | 81 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 8.5E-18 | 69 | 81 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 468 aa Download sequence Send to blast |
MEAAAGGGGT GGAGPAPFLL KTYDMVDDSS TDEIVSWTSS KKSFVVWNPP EFARLLLPTF 60 FKHSNFSSFI RQLNTYGFRK IDSEKWEFAN EDFIKDQKHL LKNIHRRKPI HSHSNPQGSH 120 IDPERAAFED EIERLSREKN TLEVNISRFK QQKSTAKLQL QDLTVKVESM EKRQKNLLAF 180 LEKAVQNPSF VEHLARRVES MDFTAFKKKR RLPSADLSQP VIENSFLDNH SSSRSESGNI 240 FHQDFSQKLR LETSCASDIN LISRSTQSSN EEGGSSQRQL SKFDTRAVQE NLHFAAETLD 300 LSDTGTSFIL RRDSSLSGKS HNDDNPRLHS LQPSVSSKED GESHISCQLN LTLASSSLRI 360 NDTACSVRMP QLGQNVRKFP DSKANSNGKE SDVRLFTKNI NLDEGSTPVC PQETSNNNHG 420 PPAASIRAND VFWERLLTER PGCPESEEAS SNYRANPYKE PDDGTVH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 7e-21 | 9 | 107 | 17 | 129 | Heat shock factor protein 1 |
5d5v_B | 7e-21 | 9 | 107 | 17 | 129 | Heat shock factor protein 1 |
5d5v_D | 7e-21 | 9 | 107 | 17 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 206 | 210 | KKKRR |
2 | 206 | 211 | KKKRRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681848 | 0.0 | LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006. | |||
GenBank | LN713260 | 0.0 | LN713260.1 Cucumis melo genomic chromosome, chr_6. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008438315.1 | 0.0 | PREDICTED: heat stress transcription factor A-5 | ||||
Swissprot | Q94BZ5 | 1e-140 | HSFA5_ARATH; Heat stress transcription factor A-5 | ||||
TrEMBL | A0A1S3AWR2 | 0.0 | A0A1S3AWR2_CUCME; heat stress transcription factor A-5 | ||||
STRING | XP_008438315.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4961 | 32 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13980.1 | 1e-143 | HSF family protein |
Publications ? help Back to Top | |||
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