PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C006287P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

Trihelix

Protein Properties

Length: 367aa MW: 40182.3 Da PI: 9.8172

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C006287P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	64.7	2e-20	57	148	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqlea 87 +W+++e+ aLi+ +r+++ +lrrg+lk+++W++v++ + ++++qC++k+e+l+kry+ + +++++ s+ +s++++f++++a MELO3C006287P1 57 CWSHEETIALIDSYRDKWYSLRRGNLKATHWQDVADSVshrcPNASPPKTAVQCRHKMEKLRKRYRTELQRARSMpLSRFTSSWVHFKRMDA 148 8******************************999996655666778999*******************977999********85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.2E-21	56	149	No hit	No description
SMART	SM00595	1.1E-11	65	154	IPR006578	MADF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MVSSPMASPS SPIDGSPPSS SHPSNPLQAL TLSAPLPPPS NPPPQATASS RRLPPPCWSH 60 EETIALIDSY RDKWYSLRRG NLKATHWQDV ADSVSHRCPN ASPPKTAVQC RHKMEKLRKR 120 YRTELQRARS MPLSRFTSSW VHFKRMDAME KGPSAKPEES DSGGEEEEEE EEDDQELYEE 180 FRNAGASGTR SVRKLYGNGM NSGGGGGGGG SGGDVAAAAA GGFRIRIPTG VSIAQPGLKS 240 YPKAEQKMNP NSNPVSGLNP AAVNFGTRVV RESNPVRPVT GKRGERERER DPVAEMVSAI 300 KTLGDGFVRM ERMKMEMARE IEAMRMEMEI KRTEMILDSQ QRIVEAFAKA VTENKKKTKR 360 IPSPEA*

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MVSSPMASPS SPIDGSPPSS SHPSNPLQAL TLSAPLPPPS NPPPQATASS RRLPPPCWSH  60
EETIALIDSY RDKWYSLRRG NLKATHWQDV ADSVSHRCPN ASPPKTAVQC RHKMEKLRKR  120
YRTELQRARS MPLSRFTSSW VHFKRMDAME KGPSAKPEES DSGGEEEEEE EEDDQELYEE  180
FRNAGASGTR SVRKLYGNGM NSGGGGGGGG SGGDVAAAAA GGFRIRIPTG VSIAQPGLKS  240
YPKAEQKMNP NSNPVSGLNP AAVNFGTRVV RESNPVRPVT GKRGERERER DPVAEMVSAI  300
KTLGDGFVRM ERMKMEMARE IEAMRMEMEI KRTEMILDSQ QRIVEAFAKA VTENKKKTKR  360
IPSPEA*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681848	0.0	LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBank	LN713260	0.0	LN713260.1 Cucumis melo genomic chromosome, chr_6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008438313.1	0.0	PREDICTED: trihelix transcription factor ASIL2
TrEMBL	A0A1S3AW32	0.0	A0A1S3AW32_CUCME; trihelix transcription factor ASIL2
STRING	XP_008438313.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4638	28	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	3e-75	Trihelix family protein