PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C006183P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | LBD | ||||||||
Protein Properties | Length: 232aa MW: 24953.6 Da PI: 8.7511 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124.9 | 4e-39 | 24 | 122 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC+++C++apyf +eq + +fa+vhk+FGasnv+k+l ++pe++r da+ +++yeA+ar+r+Pv G+v++i++lqqq ++l+ e+ MELO3C006183P1 24 PCGACKFLRRKCTPECIFAPYFDSEQgTTHFAAVHKVFGASNVSKMLLHIPEHKRLDAAITICYEAQARVREPVLGCVAHIFALQQQAARLQIEI 118 7***********************9988******************************************************************9 PP DUF260 95 allk 98 ++l+ MELO3C006183P1 119 SYLQ 122 9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.923 | 23 | 125 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.1E-38 | 24 | 122 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010311 | Biological Process | lateral root formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MSSRRSSGSC TKGKGGGSNG SGGPCGACKF LRRKCTPECI FAPYFDSEQG TTHFAAVHKV 60 FGASNVSKML LHIPEHKRLD AAITICYEAQ ARVREPVLGC VAHIFALQQQ AARLQIEISY 120 LQGYLATSEL PRPAPHLQAQ PPALVKKPTL SSIVSLPSDC PSFPAESDLS LLLDPVEQAS 180 QEKLQSPLES YQIGSNNFPS MVSIDQQVVQ KQLSSMQRIG ASLFPNVPKR S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-35 | 20 | 119 | 7 | 105 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-35 | 20 | 119 | 7 | 105 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes (PubMed:19088331). Functions in the initiation and emergence of lateral roots, in conjunction with LBD16, downstream of ARF7 and ARF19 (PubMed:19717544, PubMed:23749813). Transcriptional activator that directly regulates EXPA14, a gene encoding a cell wall-loosening factor that promotes lateral root emergence. Activates EXPA14 by directly binding to a specific region of its promoter (PubMed:22974309). Transcriptional activator that directly regulates EXPA17, a gene encoding a cell wall-loosening factor that promotes lateral root emergence (PubMed:23872272). Acts downstream of the auxin influx carriers AUX1 and LAX1 in the regulation of lateral root initiation and development (PubMed:26059335). {ECO:0000269|PubMed:19088331, ECO:0000269|PubMed:19717544, ECO:0000269|PubMed:22974309, ECO:0000269|PubMed:23749813, ECO:0000269|PubMed:23872272, ECO:0000269|PubMed:26059335}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00314 | DAP | Transfer from AT2G45420 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:19717544, ECO:0000269|PubMed:23749813}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681848 | 0.0 | LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006. | |||
GenBank | LN713260 | 0.0 | LN713260.1 Cucumis melo genomic chromosome, chr_6. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008438149.1 | 1e-169 | PREDICTED: LOB domain-containing protein 18 | ||||
Swissprot | O22131 | 1e-55 | LBD18_ARATH; LOB domain-containing protein 18 | ||||
TrEMBL | A0A1S3AVS3 | 1e-168 | A0A1S3AVS3_CUCME; LOB domain-containing protein 18 | ||||
STRING | XP_008438149.1 | 1e-169 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1771 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45420.1 | 2e-57 | LOB domain-containing protein 18 |
Publications ? help Back to Top | |||
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