PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C006086P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB_related
Protein Properties Length: 295aa    MW: 32785.4 Da    PI: 9.8742
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C006086P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.71.3e-135599147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT++E++++++a +++  + Wk+I + +g  +t  q++s+ qky
   MELO3C006086P1 55 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 99
                     789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.61E-1749105IPR009057Homeodomain-like
PROSITE profilePS5129415.21150104IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-653105IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-1853102IPR006447Myb domain, plants
SMARTSM007175.3E-1154102IPR001005SANT/Myb domain
PfamPF002492.3E-115599IPR001005SANT/Myb domain
CDDcd001671.56E-857100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MNMSHFPGID SVRTPTPSLR TAALPTSTSN SVAAFPVSED ASKKIRKPYT ITKSRESWTE  60
QEHDKFLEAL QLFDRDWKKI EAFVGSKTVI QIRSHAQKYF LKIQKSGKSE HVPPPRPKKK  120
ASHPYPQKAP KNATTQHPGM YQPLSSPFEP RYIYIPDSAA GFGLPSPNAT FSSWSCSPVP  180
TIDVSQVPKG GPTLAHSSSS ESTPRTWKLG EISDQGNQSM RNRVMPDFAQ VYSFIGSVFD  240
PTVSGHIQRL RKMDPINLET ALLLMQNLAI NLISPEFEDH VSLCYGIFFP LLVL*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818481e-116LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132601e-116LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008437998.10.0PREDICTED: protein REVEILLE 6 isoform X2
RefseqXP_008437999.10.0PREDICTED: protein REVEILLE 6 isoform X2
SwissprotQ8H0W34e-99RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A1S3AVA90.0A0A1S3AVA9_CUCME; protein REVEILLE 6 isoform X2
STRINGXP_008437994.10.0(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.11e-102MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]