PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C006078P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WRKY
Protein Properties Length: 180aa    MW: 20962.8 Da    PI: 9.8163
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C006078P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.71.9e-3192150159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK vk s +prsYY+Ct+ +C+vkk+++r ++d ++v++tYeg Hnh+
  MELO3C006078P1  92 LDDGYRWRKYGQKAVKHSLYPRSYYKCTYVTCNVKKQIQRLSKDRSIVVTTYEGIHNHP 150
                     59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-3179150IPR003657WRKY domain
SuperFamilySSF1182901.83E-2784150IPR003657WRKY domain
PROSITE profilePS5081127.7687152IPR003657WRKY domain
SMARTSM007748.5E-3592151IPR003657WRKY domain
PfamPF031062.7E-2493150IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MEEEHHQLQQ PSPPPPPCSD PLATSLEIDW IAVLYGQEAI GDLPPASSTC ESSERRRDEE  60
KTNRRKNGGR RWRKAAGRRR FEFQTRSTED ILDDGYRWRK YGQKAVKHSL YPRSYYKCTY  120
VTCNVKKQIQ RLSKDRSIVV TTYEGIHNHP SHILMQTLTP LLKQIHTSFP LSKLFMNYN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-2483149874Probable WRKY transcription factor 4
2lex_A2e-2483149874Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818480.0LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008437983.11e-134PREDICTED: probable WRKY transcription factor 75
SwissprotQ8VWQ43e-42WRK56_ARATH; Probable WRKY transcription factor 56
SwissprotQ9FFS32e-42WRK24_ARATH; Probable WRKY transcription factor 24
TrEMBLA0A1S3AVD51e-132A0A1S3AVD5_CUCME; probable WRKY transcription factor 75
STRINGXP_008437983.11e-133(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32273471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46130.19e-45WRKY DNA-binding protein 43