PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C006054P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | bZIP | ||||||||
Protein Properties | Length: 421aa MW: 44470.7 Da PI: 9.4996 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 71.5 | 1.2e-22 | 284 | 346 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 ekelkrerrkq+NRe+ArrsR+RK+ae+eeL++kv++L+aeN a ++e+++l+++++klk+e+ MELO3C006054P1 284 EKELKRERRKQSNRESARRSRLRKQAETEELARKVDSLTAENVAIRSEISRLSENSEKLKKEN 346 89***********************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07777 | 2.5E-34 | 1 | 98 | IPR012900 | G-box binding protein, multifunctional mosaic region |
Pfam | PF16596 | 1.2E-26 | 134 | 266 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 2.7E-16 | 278 | 344 | No hit | No description |
SMART | SM00338 | 8.3E-21 | 284 | 348 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.1E-20 | 284 | 346 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 13.231 | 286 | 349 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 3.5E-10 | 287 | 343 | No hit | No description |
CDD | cd14702 | 1.00E-20 | 289 | 337 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 291 | 306 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 421 aa Download sequence Send to blast |
MGTSEEAKSV KTEKPSSPTP PDQNGVPNSA SIHVFPDWAA MQAYYGPRVA VPPYYNSAVA 60 SGHAPHPYMW GPPQMIPPYG TPYAAIYSHG GVYAHPAVSM GPHSHAPGVP SSPAQAATPL 120 SIETPSKVSG NSSQGLMKKL KGFDGLAMSI GNVSTESAEG GAEHGQSESM ETEGSSDGSD 180 GTTAGASHNK RKRSREGTPT TGGKDAKIEP QASPVTAAEM NESSSKLLGT TKAVNATGKL 240 GSVISPGMST ALELRNPSSM NAMTSPTTVP PCSVLPSEVW LQNEKELKRE RRKQSNRESA 300 RRSRLRKQAE TEELARKVDS LTAENVAIRS EISRLSENSE KLKKENSTLM EKLKSAQSGR 360 SEALDMNEKK MQQPVSAEMK GPVNKSISEE SIICKKNSSS GAKLRQLLDT SPRADAVAAS 420 * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 300 | 306 | RRSRLRK |
2 | 300 | 307 | RRSRLRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00318 | DAP | Transfer from AT2G46270 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681848 | 1e-132 | LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006. | |||
GenBank | LN713260 | 1e-132 | LN713260.1 Cucumis melo genomic chromosome, chr_6. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008437947.1 | 0.0 | PREDICTED: common plant regulatory factor 1 isoform X1 | ||||
Refseq | XP_008437948.1 | 0.0 | PREDICTED: common plant regulatory factor 1 isoform X1 | ||||
Swissprot | Q99089 | 1e-129 | CPRF1_PETCR; Common plant regulatory factor 1 | ||||
TrEMBL | A0A1S3AVB1 | 0.0 | A0A1S3AVB1_CUCME; common plant regulatory factor 1 isoform X1 | ||||
STRING | XP_008437947.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5301 | 34 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46270.1 | 1e-108 | G-box binding factor 3 |
Publications ? help Back to Top | |||
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