PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C005992P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

HD-ZIP

Protein Properties

Length: 225aa MW: 25934 Da PI: 5.5271

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C005992P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.9	9.5e-20	26	79	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +R++f++eq++ Le+ Fe+++ + +++ +LA +lgL rqV +WFqN+Ra++k MELO3C005992P1 26 NRRRFSEEQIKSLESIFESESRLEPRKKLQLAGELGLHPRQVAIWFQNKRARWK 79 699**************************************************9 PP
2	HD-ZIP_I/II	120.7	7.3e-39	26	117	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ++rr+s+eq+k+LE+ Fe+e++Lep++K +la eLgl+prqva+WFqn+RAR+k+kqlE+dy++L+++y++l+++ e+L+ke+++L +l++ MELO3C005992P1 26 NRRRFSEEQIKSLESIFESESRLEPRKKLQLAGELGLHPRQVAIWFQNKRARWKSKQLERDYSVLRANYNTLASRFEALKKEKQALSMQLQK 117 589************************************************************************************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	7.1E-19	13	83	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.702	21	81	IPR001356	Homeobox domain
SMART	SM00389	1.7E-16	23	85	IPR001356	Homeobox domain
Pfam	PF00046	3.2E-17	26	79	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.1E-19	26	88	IPR009057	Homeodomain-like
CDD	cd00086	9.43E-14	27	82	No hit	No description
PRINTS	PR00031	2.9E-5	52	61	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	56	79	IPR017970	Homeobox, conserved site
PRINTS	PR00031	2.9E-5	61	77	IPR000047	Helix-turn-helix motif
Pfam	PF02183	4.3E-16	81	122	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0009738	Biological Process	abscisic acid-activated signaling pathway
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MLNEDAEYSP QASMAEAFAM RKKSMNRRRF SEEQIKSLES IFESESRLEP RKKLQLAGEL 60 GLHPRQVAIW FQNKRARWKS KQLERDYSVL RANYNTLASR FEALKKEKQA LSMQLQKLNN 120 LIQRSMEETE SCRGVLSVET IDGTSENDNR TKYESEAKPC VSAEEKSEHE LEVLSSGVKE 180 AYIGLEDPQL REPSLISTPN WSNLDSEGLF SQSNTNGQWW NFWS*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269\|PubMed:15604708, ECO:0000269\|PubMed:8771791}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00320	DAP	Transfer from AT2G46680	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269\|PubMed:16055682, ECO:0000269\|PubMed:8771791}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681848	0.0	LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBank	LN713260	0.0	LN713260.1 Cucumis melo genomic chromosome, chr_6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008437846.1	1e-164	PREDICTED: homeobox-leucine zipper protein ATHB-7
Swissprot	P46897	4e-56	ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBL	A0A1S3AUY7	1e-162	A0A1S3AUY7_CUCME; homeobox-leucine zipper protein ATHB-7
STRING	XP_008437846.1	1e-163	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5635	34	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.1	2e-58	homeobox 7

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhou SF, et al. Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis. New Phytol., 2015. 208(1): p. 188-97 [PMID:25919792]