PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MELO3C005960P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 350aa MW: 39486.9 Da PI: 7.3017 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.8 | 0.00073 | 4 | 26 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C +sFs+ L H+r+H MELO3C005960P1 4 HKCKLCFRSFSNGRALGGHMRSH 26 79********************9 PP | |||||||
2 | zf-C2H2 | 13.6 | 0.00019 | 218 | 240 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k+F++ L H +H MELO3C005960P1 218 YKCETCNKVFRSYQALGGHRASH 240 9***********99999998887 PP | |||||||
3 | zf-C2H2 | 11.5 | 0.00094 | 275 | 297 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C ++Fs+ L H r+H MELO3C005960P1 275 HECPVCFRVFSSGQALGGHKRSH 297 79******************999 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 7.1E-5 | 3 | 31 | No hit | No description |
PROSITE profile | PS50157 | 10.679 | 4 | 31 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.3E-6 | 4 | 27 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.065 | 4 | 26 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 6 | 26 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.429 | 218 | 245 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.92E-7 | 218 | 240 | No hit | No description |
Pfam | PF13912 | 6.5E-12 | 218 | 242 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.012 | 218 | 240 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 220 | 240 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.92E-7 | 270 | 297 | No hit | No description |
PROSITE profile | PS50157 | 9.224 | 275 | 297 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 4.5E-11 | 275 | 297 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.19 | 275 | 297 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 277 | 297 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 350 aa Download sequence Send to blast |
MDSHKCKLCF RSFSNGRALG GHMRSHMMNL PLPPKGEEDA APPHLHLCED GDSASFLSSP 60 SSSEGDEEEK GVSYGLRENP KRSIRVVDPE FSFAVDAASV VLQDRESETE SSKNPTRRRS 120 KRTRKPDRRH HHHLHRHYNV FKRLQEKKMN QPESWTEAEP VSSISGSTTE EDVAFWLMML 180 SRDKWTKQKE EEELEESMEE TDDSEAVKFP KNRNRGNYKC ETCNKVFRSY QALGGHRASH 240 KKIKVSLTYN NPQLGSHHEN AATPSSGSIA ERKIHECPVC FRVFSSGQAL GGHKRSHVTG 300 YSNPPKTAQK KFPDSLIDLN LPAPFEEDDV SQIELSAVSD ADFVNAIRQ* |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00416 | DAP | Transfer from AT3G60580 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681848 | 0.0 | LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006. | |||
GenBank | LN713260 | 0.0 | LN713260.1 Cucumis melo genomic chromosome, chr_6. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008437783.1 | 0.0 | PREDICTED: zinc finger protein ZAT9 | ||||
TrEMBL | A0A1S3AVF9 | 0.0 | A0A1S3AVF9_CUCME; zinc finger protein ZAT9 | ||||
STRING | XP_008437783.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF767 | 34 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G60580.1 | 2e-60 | C2H2-like zinc finger protein |