PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C005928P2
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 379aa    MW: 43401.4 Da    PI: 5.8507
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C005928P2genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.84e-13157208155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h ++Er+RR+++N+ ++ +++l+P++   + ++ + a+i   A++++k+L+
  MELO3C005928P2 157 QRMTHIAVERNRRRQMNDHLNVIKSLIPTS---YVQRGDQASIIGGAIDFVKELE 208
                     79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.11E-16147218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-13155211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.30E-9155205No hitNo description
PROSITE profilePS5088814.881156207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-10157208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-9162213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MERLQGPINP CLYGEYSETG CSEQEFSNLG FEESEEVCLL TSSLEDKIPF LQMLQSVESQ  60
SFKEPNFQSL LKLQHLNKPW EEGVSKIQEL VELFSSPINS ETKDQNQPPN SDRVFSECNQ  120
NQGLSQTQMT KFPPVIKERR KRKRSKPTKN KEEVESQRMT HIAVERNRRR QMNDHLNVIK  180
SLIPTSYVQR GDQASIIGGA IDFVKELEQL LESLEALRKE RKGAEGECKD EQSEVRVASN  240
RRIGEGVCAE LRSEVAEIEV TMIQTHVNLK IRCRKRQGQL LKVIVALEDL RLTVLHLNIT  300
SQTAATMLYS FNLKIEDECK LESEEQIAAT VNQIFSFMNN GRLVNEAKGK FQAVQWQSLT  360
MEEDPPFPPL FPIRKKEK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138143RRKRKR
2139146RKRKRSKP
3157168RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818480.0LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008437748.10.0PREDICTED: transcription factor bHLH67 isoform X1
TrEMBLA0A1S3AVB50.0A0A1S3AVB5_CUCME; transcription factor bHLH67 isoform X1
STRINGXP_008437748.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68943449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61950.11e-77bHLH family protein