PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C005902P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

Dof

Protein Properties

Length: 275aa MW: 29414.9 Da PI: 8.8059

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C005902P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	127.9	2.9e-40	52	112	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ke+alkcprC+s+ntkfCyynnyslsqPryfCkaCrryWt+GG+lrnvPvGgg+rknk+ss MELO3C005902P1 52 KEQALKCPRCNSSNTKFCYYNNYSLSQPRYFCKACRRYWTEGGSLRNVPVGGGSRKNKRSS 112 6899******************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-28	46	110	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.3E-34	54	110	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.339	56	110	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	58	94	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MDTAHWPQFA GGGGVVVKQM EGGGGSSSSC SKPNSGNGNG NNLLERKVRG EKEQALKCPR 60 CNSSNTKFCY YNNYSLSQPR YFCKACRRYW TEGGSLRNVP VGGGSRKNKR SSLSSSSTSS 120 DHNKKINASH QIINHQDLNL AIFPPNNNNN NNNTSISTSS SSSHLLASFM TAPATGMFNS 180 SGGFGLNELK PPASLSFSLE GFDQNGVRGY GDLHHHHHQD QTAVMFPIED MKQSNDHEDN 240 RGGLGGDNNN NTNSNNNSGG STGFWNGMLG GGSW*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681895	0.0	LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005.
GenBank	LN713263	0.0	LN713263.1 Cucumis melo genomic chromosome, chr_9.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008437630.1	0.0	PREDICTED: dof zinc finger protein DOF4.6-like
TrEMBL	A0A1S3AV39	0.0	A0A1S3AV39_CUCME; dof zinc finger protein DOF4.6-like
STRING	XP_008437630.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF674	34	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	1e-40	Dof family protein