PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MELO3C005815P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 560aa MW: 62584.7 Da PI: 5.2717 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 39.9 | 1.1e-12 | 2 | 45 | 42 | 87 |
trihelix 42 gferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 g++r++k+Ckek+en++k+yk++keg+++r ++ +t+++f+qlea MELO3C005815P1 2 GYKRNAKKCKEKFENVQKYYKRTKEGRGGR--QDGKTYKFFTQLEA 45 9***************************98..56667*******85 PP | |||||||
2 | trihelix | 106 | 2.6e-33 | 355 | 440 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+kqevlaLi++r +e++++++ k+plWee+s+ m + g++rs+k+Ckekwen+nk++kk+ke++kkr e+s+tcpyf++l+a MELO3C005815P1 355 RWPKQEVLALIKLRGGLESKYQETGPKGPLWEEISAGMIKMGYKRSAKRCKEKWENINKYFKKVKESNKKR-REDSKTCPYFNELDA 440 8*********************************************************************8.78999*******985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 2.0E-7 | 2 | 46 | No hit | No description |
PROSITE profile | PS50090 | 6.922 | 348 | 412 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 5.7E-23 | 354 | 441 | No hit | No description |
CDD | cd12203 | 1.67E-30 | 354 | 419 | No hit | No description |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 560 aa Download sequence Send to blast |
MGYKRNAKKC KEKFENVQKY YKRTKEGRGG RQDGKTYKFF TQLEALHNAN VAPSSSNSSF 60 TLPQPLPAAA TTTTPVGFGI SNPTPISSVK ISSSSSQTPM GIFSTPSDHF TVRPPPAVAA 120 PMGVSFSSNT SSASTEDDDD DDEDEEMGFD VDLEGEPENV AGSSRKRRRG VVKGNNDEWR 180 SSSSSSDHKM MMEFFEGLMK QVMEKQEVMQ QKFLEAIEKR EQDRMVREEN WKKEEMFRLS 240 QEQERMAQER TISASRDAAI IAFLQKFTGQ TIQFSAPATA PQVPVPVPMA VSVPMPMPVP 300 APLSPVSSHQ PMQPQTLPHL QIQPPTNTIP LEQPKPKLQE IIQGGDGSSE PISSRWPKQE 360 VLALIKLRGG LESKYQETGP KGPLWEEISA GMIKMGYKRS AKRCKEKWEN INKYFKKVKE 420 SNKKRREDSK TCPYFNELDA LYRKKILSTA AATATASDHS GSFEQNPIQN MEIIPPSTTT 480 TTTDHHLQSQ PHSSSIPQGL SATLFGEGTE EQQQQPTSTK EDDIYRRHLN QDDGNDENND 540 DYCSDDDEDD EDDLPEEKK* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 3 | 11 | KRNAKKCKE |
2 | 164 | 168 | RKRRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681895 | 0.0 | LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005. | |||
GenBank | LN713263 | 0.0 | LN713263.1 Cucumis melo genomic chromosome, chr_9. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008437493.1 | 0.0 | PREDICTED: trihelix transcription factor GTL1-like isoform X2 | ||||
TrEMBL | A0A1S3AUS0 | 0.0 | A0A1S3AUS0_CUCME; trihelix transcription factor GTL1-like isoform X2 | ||||
STRING | XP_008437492.1 | 0.0 | (Cucumis melo) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G76890.2 | 8e-63 | Trihelix family protein |