PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C005774P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

Dof

Protein Properties

Length: 317aa MW: 34323.9 Da PI: 8.2727

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C005774P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.9	2.6e-39	39	99	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ke+al+cprC+s+ntkfCyynnysl+qPryfCk+CrryWt+GG+lrn+PvGgg+rknk+ s MELO3C005774P1 39 KEQALNCPRCNSSNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRPS 99 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-29	32	97	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.7E-33	41	97	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.096	43	97	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	45	81	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MDTAQWPQEI VVKPIEEIVT NTCPKPSVSI LERKIRPQKE QALNCPRCNS SNTKFCYYNN 60 YSLTQPRYFC KTCRRYWTEG GSLRNIPVGG GSRKNKRPSS SSSNSSSSTS PTQPTSSSQP 120 NFPKKILDHQ LPQNPKITPS QDLNLFFPPS NNQDHHHFTT SNNNLSEMIL VGSNPSINNN 180 ATSSSASATT TMSSPPPSQP SVMELLTGMA NNNNNNSSRG LNCFVPMSSV VVPDPSSVYT 240 GGFPDLQDQF KPSLGFSLDG YGVVSTEAGN GAGRLMQLPF EDLKQGSNGV DQQGKEQGND 300 HNSSGYWSGM LGGGSW*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681895	0.0	LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005.
GenBank	LN713263	0.0	LN713263.1 Cucumis melo genomic chromosome, chr_9.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008437432.1	0.0	PREDICTED: dof zinc finger protein DOF4.6-like
Swissprot	Q8LAP8	5e-64	DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBL	A0A1S3AUK1	0.0	A0A1S3AUK1_CUCME; dof zinc finger protein DOF4.6-like
STRING	XP_008437431.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF674	34	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	3e-54	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]