PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C005772P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB
Protein Properties Length: 264aa    MW: 29099 Da    PI: 4.6263
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C005772P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.3e-161562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed llv++++q G g+W++ +++ g+ R++k+c++rw +yl
   MELO3C005772P1 15 KGPWTAREDALLVNYIQQNGEGHWRALPKKAGLLRCGKSCRLRWMNYL 62
                     79******************************99************97 PP
2Myb_DNA-binding538e-1768113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ T++Ed+l+++++ +lG++ W++Ia +++ gRt++++k++w+++l
   MELO3C005772P1  68 RGNITADEDDLIIKLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 113
                      7999******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.9721062IPR017930Myb domain
SuperFamilySSF466891.3E-2912109IPR009057Homeodomain-like
SMARTSM007173.8E-121464IPR001005SANT/Myb domain
PfamPF002496.2E-141562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-231669IPR009057Homeodomain-like
CDDcd001672.86E-91762No hitNo description
PROSITE profilePS5129426.45763117IPR017930Myb domain
SMARTSM007176.3E-1667115IPR001005SANT/Myb domain
PfamPF002495.2E-1568113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-2670117IPR009057Homeodomain-like
CDDcd001673.88E-1172113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MGRTSSCCSK GGLHKGPWTA REDALLVNYI QQNGEGHWRA LPKKAGLLRC GKSCRLRWMN  60
YLRPDIKRGN ITADEDDLII KLHSLLGNRW SLIAGRLPGR TDNEIKNYWN SHLSKRLAIT  120
KDNAGETKKE SNGETSNTRK PTEVSSFCND DNSSNGIGSE LLLSSGNQGG EDGGSRGGGG  180
ETDQLGVNGD EEIIEKVKAG REELEESGDF FDGCEGLYKG LSWNGSENGE RVDEIEDDSY  240
QQLLNLEGED YIQLESFIDY FLI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-261311725128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818950.0LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008437429.10.0PREDICTED: transcription factor WER-like
SwissprotQ388506e-62MYB5_ARATH; Transcription repressor MYB5
TrEMBLA0A1S3AU000.0A0A1S3AU00_CUCME; transcription factor WER-like
STRINGXP_008437429.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.15e-64myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]