PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C005761P2
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ARF
Protein Properties Length: 590aa    MW: 65353.1 Da    PI: 6.8888
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C005761P2genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.27.4e-2427128199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+kvlt sd++++g +++ +k+a+e+       + ++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF   + ++
  MELO3C005761P2  27 FCKVLTASDTSTHGGFSVLRKHATEClppldmTLATP-TQDLVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLSAGDSFVFL--RGDN 118
                     99**************************999744433.458************************************************..3489 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     +el+v+v+r+
  MELO3C005761P2 119 GELRVGVRRR 128
                     999*****97 PP
2Auxin_resp99.74e-33153231182
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                     a+ha++t++ F v+Y+Pr+   +F+++++k+++a+++k+svGmRf m+fe+eds+err+sGt++g  d++p +WpnS WrsL
  MELO3C005761P2 153 ASHAVTTQTRFVVYYKPRT--CQFIISLNKYLEAVNNKFSVGMRFNMSFEGEDSPERRFSGTIIGAADISP-HWPNSSWRSL 231
                     689***************6..89*********************************************999.*********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.05E-3818156IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-3920142IPR015300DNA-binding pseudobarrel domain
CDDcd100171.62E-2025127No hitNo description
PROSITE profilePS5086312.33727129IPR003340B3 DNA binding domain
SMARTSM010199.9E-2327129IPR003340B3 DNA binding domain
PfamPF023626.0E-2227128IPR003340B3 DNA binding domain
PfamPF065076.1E-31153231IPR010525Auxin response factor
PfamPF023094.4E-6468514IPR033389AUX/IAA domain
SuperFamilySSF542773.09E-14473554No hitNo description
PROSITE profilePS5174525.001478559IPR000270PB1 domain
PfamPF023091.2E-6524556IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MPESNQNEPK SMDPCPPEPP RPVVHSFCKV LTASDTSTHG GFSVLRKHAT ECLPPLDMTL  60
ATPTQDLVAK DLHGYEWRFK HIFRGQPRRH LLTTGWSTFV TSKRLSAGDS FVFLRGDNGE  120
LRVGVRRRAR QQSSMPPSVI SSQSMHLGVL ATASHAVTTQ TRFVVYYKPR TCQFIISLNK  180
YLEAVNNKFS VGMRFNMSFE GEDSPERRFS GTIIGAADIS PHWPNSSWRS LRVQWDEQTS  240
ILRPERVSPW DIEPLTSSTV TGLSQPISKN KRPRQPTPAH DCADLTKPTH WDSGLAQSHD  300
GKQCSNAAEG RKGENNESCH HRETDAISNS SCVSRTQTDT WLSPTQSNSY KHPVNDMAQD  360
SKTVPSSGWS FLSGTPTSHL VKLSDDQILD PIENGKKGET VASCRLFGID LNHLAAEKAS  420
SQPSSGSSDT DGRISTLSVA QSDPKSDNLE VSIERKSEPS QASLKDIQCN QSSSANTRSR  480
TKVLMHGMAV GRAVDLTILE GYDQLIDELE KMFDVRGQLC ARDKWEIVYT DDEGDMMLVG  540
DDPWEEFRNM VRRIFICSKE QVKNMSSGSK QLTSIEVEGD VVTPVSPAV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-122125798357Auxin response factor 1
4ldw_A1e-122125798357Auxin response factor 1
4ldw_B1e-122125798357Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818950.0LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008437407.10.0PREDICTED: auxin response factor 9
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A1S3AUJ00.0A0A1S3AUJ0_CUCME; Auxin response factor
STRINGXP_008437407.10.0(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.20.0auxin response factor 9