PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C005699P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | TALE | ||||||||
Protein Properties | Length: 212aa MW: 24067 Da PI: 8.9674 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.4 | 1.4e-09 | 111 | 148 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps ++ LA+++gL+ +qV++WF N R + MELO3C005699P1 111 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 148 664459******************************98 PP | |||||||
2 | BELL | 58.4 | 1.8e-19 | 1 | 43 | 30 | 72 |
BELL 30 lqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +++v++sFeavag g+a++Y +lA+ka+SrhFr+Lkd i++qi MELO3C005699P1 1 MKAVVASFEAVAGSGAARVYSALASKAMSRHFRSLKDGIVGQI 43 89****************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07526 | 1.7E-14 | 1 | 39 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.179 | 89 | 152 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.8E-9 | 92 | 156 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.02E-11 | 92 | 153 | No hit | No description |
SuperFamily | SSF46689 | 8.13E-18 | 93 | 159 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.0E-28 | 95 | 158 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.8E-18 | 109 | 148 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MKAVVASFEA VAGSGAARVY SALASKAMSR HFRSLKDGIV GQIQATRKAM GEKDPIAPGT 60 TRGETPRLRV IDQALRQQRA FHQISIMESH PWRPQRGLPE RSVSVLRAWL FEHFLHPYPS 120 DVDKHILARQ TGLSRSQVSN WFINARVRLW KPMVEEMYLE ETKEQEEEID NSFNNNANNS 180 FDGVTDFNDD IDGHRSIATR LEDQNRHQIN S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 1e-16 | 98 | 156 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 1e-16 | 98 | 156 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681895 | 0.0 | LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005. | |||
GenBank | LN713263 | 0.0 | LN713263.1 Cucumis melo genomic chromosome, chr_9. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008437318.1 | 1e-148 | PREDICTED: LOW QUALITY PROTEIN: homeobox protein BEL1 homolog | ||||
Swissprot | Q38897 | 7e-83 | BEL1_ARATH; Homeobox protein BEL1 homolog | ||||
TrEMBL | A0A1S3AUA2 | 1e-146 | A0A1S3AUA2_CUCME; LOW QUALITY PROTEIN: homeobox protein BEL1 homolog | ||||
STRING | XP_008437318.1 | 1e-147 | (Cucumis melo) | ||||
STRING | XP_004143976.1 | 1e-148 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4650 | 20 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41410.1 | 4e-84 | TALE family protein |
Publications ? help Back to Top | |||
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