PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C005530P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | C2H2 | ||||||||
Protein Properties | Length: 263aa MW: 30081.8 Da PI: 7.7529 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.6 | 0.00089 | 4 | 26 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C++ F++ L H++ H MELO3C005530P1 4 HKCKLCSRAFTNGRALGGHMKAH 26 79******************998 PP | |||||||
2 | zf-C2H2 | 12 | 0.00063 | 160 | 181 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC++C+k F++ L +H + + MELO3C005530P1 160 KCEKCKKQFRSYRALFSHEKIC 181 7*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.054 | 4 | 26 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.032 | 4 | 31 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.54E-5 | 4 | 29 | No hit | No description |
Pfam | PF13912 | 9.8E-7 | 4 | 27 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 6 | 26 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 53 | 159 | 179 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.85 | 159 | 186 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 0.002 | 160 | 177 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.14E-6 | 160 | 224 | No hit | No description |
SMART | SM00355 | 0.57 | 202 | 224 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.432 | 202 | 224 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.6E-10 | 202 | 224 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 204 | 224 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MVSHKCKLCS RAFTNGRALG GHMKAHLTAP PKPPPSPSSS FSDHDESTLY ELREENPKRG 60 DFRFSDPVFN IVLQDRESET ESKNPTRKRS KRWRKPEVEL EVEPASSVSD ASPEEDLAIC 120 LMMLSRDRWV ESQNQNEGRS WFEELGSKIK VKKGIRRKKK CEKCKKQFRS YRALFSHEKI 180 CQSEQEEEEE EEEEEGNRRR IFKCPFCYKL FGSGQALGGH KRSHLVSTTN NSSVSLKLQI 240 SLIDLNLPAP LEEDDYSVVS DA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 147 | 158 | KIKVKKGIRRKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681895 | 0.0 | LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005. | |||
GenBank | LN713263 | 0.0 | LN713263.1 Cucumis melo genomic chromosome, chr_9. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008437074.1 | 0.0 | PREDICTED: zinc finger protein ZAT9 | ||||
TrEMBL | A0A1S3ATN8 | 0.0 | A0A1S3ATN8_CUCME; zinc finger protein ZAT9 | ||||
STRING | XP_008437073.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF767 | 34 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60580.1 | 5e-38 | C2H2-like zinc finger protein |